1WJ9


Conserved Protein Domain Family
Cas6_I-E
?
cd09664: Cas6_I-E 
Click on image for an interactive view with Cn3D
CRISPR/Cas system-associated RAMP superfamily protein Cas6e
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family
Links
?
Statistics
?
PSSM-Id: 187795
Aligned: 5 rows
Threshold Bit Score: 228.222
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
1WJ9_A      1 MWLTKLVLNPasra----arrDLANPYEMHRTLSKAVSRa--lEEGREr----LLWRLEpargLEPPv-VLVQTLTEPDw 69  Thermus thermophil...
NP_662850   1 MIATMLTLSRkdv-----kalRITDSYSLHRVIYSLFEDvrseAEKRSsvpsgFLFADKgg-dAKGRk-ILILSDRPPLq 73  Chlorobium tepidum...
NP_289305   1 MYLSRITLHTgqlspaqllhlVDRGEYVMHQWLWDLFPG----GKERQ-----FLYRREe---LQGAfrFFVLSQERPAe 68  Escherichia coli O...
NP_457328   1 MYLSRIQLRFnnlrpemlakwNSARPYASHQWLWQLFPE----QELRQ-----FLFREE----AHGG--FFMLSAIPPLl 65  Salmonella enteric...
Q46897      1 MYLSKVIIARa----------WSRDLYQLHQGLWHLFPNr--pDAARD-----FLFHVEkr-nTPEGchVLLQSAQMPVs 62  Escherichia coli K-12

1WJ9_A     70 svldegyaqVFPPKPFHPALKPGQRLRFRLRANPAkr------------------laATGKRVALKTPAEKVAWLERrlE 131 Thermus thermophil...
NP_662850  74 pa-----hgELVSRPVPEEFLQHRFYKFEVTLNPTrk------------------enKSGKRVPIKTREEVAAWFGGksQ 130 Chlorobium tepidum...
NP_289305  69 se-----tfTIECRSFVPELRTGQQLCFNLRANPTickagkrhdll-meakrqvrgqAEGSDVWLHQQQAALDWLAAqgE 142 Escherichia coli O...
NP_457328  66 qh----slfLIETKLFNPQLTNGLELDFQLRANPVitrngkrsdvmmnakhqakangVEKERWWELQQQAAQAWLEQqgQ 141 Salmonella enteric...
Q46897     63 ta----vatVIKTKQVEFQLQVGVPLYFRLRANPIktildnqk-------rldskgnIKRCRVPLIKEAEQIAWLQR--K 129 Escherichia coli K-12

1WJ9_A    132 EGGFRLLEGErg-----------------pwVQILQDTFLevRRKKDGEEAGKLLQVQAVLFEGRLEVVDPERALATLRR 194 Thermus thermophil...
NP_662850 131 TSWGFSVDPArl------------------dVRMLPVMQFs-KQGDRTVTHGAARVSGMLRVENRDLFIESFNKGIGRGR 191 Chlorobium tepidum...
NP_289305 143 RSGFTLLDTS---------------------VDAYRQQQLrrENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSR 201 Escherichia coli O...
NP_457328 142 QHGFRLIAPEpddfamwagdeyselqahcgcVQAYQQHRFvrKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSK 221 Salmonella enteric...
Q46897    130 LGNAARVEDVh--------------------PISERPQYF--SGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAK 187 Escherichia coli K-12

1WJ9_A    195 GVGPGKALGLGL 206 Thermus thermophilus HB8
NP_662850 192 AFGFGLLQIEPL 203 Chlorobium tepidum TLS
NP_289305 202 AFGCGLMLIKPG 213 Escherichia coli O157:H7 EDL933
NP_457328 222 ALGCGMLMVKRK 233 Salmonella enterica subsp. enterica serovar Typhi str. CT18
Q46897    188 SMGCGLLSLAPL 199 Escherichia coli K-12
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap