Conserved Protein Domain Family
Cas5_I-B
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cd09658: Cas5_I-B 
CRISPR/Cas system-associated RAMP superfamily protein Cas5
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex
Links
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Statistics
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PSSM-Id: 187789
Aligned: 7 rows
Threshold Bit Score: 202.691
Created: 11-Jan-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
YP_002731106  17 LRIKAYQlfaNYRKPMSYnYWDSYPLPPLSTIRGWFHYVvwngnkdenrhYIPISMSIQGKFssviqdlqtlikfdrkrn 96  Persephonella m...
O27159         4 LAVEIFQpfaQFRNPFTFdYAQTYPLSPKSTVTGMLQNAtgry---ydqdISEISVSIHGLFestfwnyqsfivgdialk 80  Methanothermoba...
YP_002534252   4 LRIEIKAstgHFAIPFLIfERKTFPIPMYSTMIGFVCNIladeakisrflSSNFSMAVVGDHdgvveeytwfrnlskesh 83  Thermotoga neap...
Q184H2         4 LKLDLFQetaCYKKPFAMkITETYPLPPYSTINGLIHKIlna------teYIPFNISVQGTYesifnnyqtt-------- 69  Clostridium dif...
O66696         4 LKAEFFSpiaLFKTPFSIkGIETYPLPPYSTVIGLLYTAsgk-----kwkGERFNISVQGDYeaifrdyvrfr------- 71  Aquifex aeolicus
O57910         7 LIVDARPlqaHFRIPHTSlLLDTYPFPPKTTAVGMLAGCmgl------geEGFKKLLEKIKYgviiedpgekie------ 74  Pyrococcus hori...
NP_142172      7 LIVDARPlqaHFRIPHTSlLLDTYPFPPKTTAVGMLAGCmgl------geEGFKKLLEKIKYgviiedpgekie------ 74  Pyrococcus hori...

YP_002731106  97 ------tkgeiviegfnkafsksPTYVTNIFDINLHIYIkaeehFLHRFIENVFKLEYp-------sIGRYEDLVRIDEL 163 Persephonella m...
O27159        81 yhhnklklwnkgyplysvnkksqRSPSYQQELFNGHYYIfl--rGDDDIIEEVCDSLRkptk--plsLGRSEDIIFIRGI 156 Methanothermoba...
YP_002534252  84 tk--kficsfnreanneiehpggQSPVKIQTLINPKINLfl--kAEEWILEMVKESFEnpqcisrphLGRSEDVVDDIKV 159 Thermotoga neap...
Q184H2        70 --------------yfykkdsitSMPMNSHMLLNVNLIIhi--gGDFDLLEEIYDSLLnyde--hlsLGRKEDLVRINDI 131 Clostridium dif...
O66696        72 -------------kynkkdkkleTLPLEVPLFYNFRLTVhi--lGDENLLKEFEKALKfpyv--fpyLSGGEYPVKITKV 134 Aquifex aeolicus
O57910        75 -----------evsviyknpyspSYPITRVSLYKPRFRMff--aGEERVIEEAYEGLLdpkf--vpyMGDSESLFYPGKK 139 Pyrococcus hori...
NP_142172     75 -----------evsviyknpyspSYPITRVSLYKPRFRMff--aGEERVIEEAYEGLLdpkf--vpyMGDSESLFYPGKK 139 Pyrococcus hori...

YP_002731106 164 kiie-pepIDLYEEPHDIYygiyinkkt--------adyfglrgINYRMNfkydgd---llnktGLRYFE 221 Persephonella marina EX-H1
O27159       157 hrdfevieREVKKNLWMTYptyi-----------------klsnGKTHFPirnerf---pvysiPERVIF 206 Methanothermobacter therm...
YP_002534252 160 el-----iDCEKKQVFDTN-------------------------GYTWMPspefvd---dvsdsYEELYK 196 Thermotoga neapolitana DS...
Q184H2       132 r------fVEVNKFEVDEDiqlddye------------nyklseCNIRMPiyipktslqdtdidGISYRL 183 Clostridium difficile 630
O66696       135 k------mVACRKEYFDTFnipknayipenifteefrvsleghgVYYRVPsflisqkprqhewvGVYYVQ 198 Aquifex aeolicus
O57910       140 ryv---evVDVQEGKEDILrsvi-----------------pevkFKEFVPlrrkv----lvpkvYEAPVK 185 Pyrococcus horikoshii
NP_142172    140 ryv---evVDVQEGKEDILrsvi-----------------pevkFKEFVPlrrkv----lvpkvYEAPVK 185 Pyrococcus horikoshii OT3
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