Conserved Protein Domain Family
Cmr1_III-B
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cd09657: Cmr1_III-B 
CRISPR/Cas system-associated RAMP superfamily protein Cmr1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex
Links
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Statistics
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PSSM-Id: 187788
Aligned: 12 rows
Threshold Bit Score: 90.8901
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_00075987   4 PEPIVIEtLTPIWTGGVNGsp---------dTVRETGIIGSMRWWYEAIvrgigky---------acnplsdSKCMLDGK 65  Methanosarcina b...
NP_578859     3 IEEFEIEsITSTHLLEVLTre--------ypEVRSPSIKGAMRWWFRALag--------------------sYFGDDAQK 54  Pyrococcus furio...
NP_241193    30 KESLNISiITHMFGGGTKAgqvd-----keiPVRSTSIRGNLRFWWRATr---------------------gAMYPNVKS 83  Bacillus halodur...
NP_342943    20 VARINFVgVTPWWGRDHRGyt--------sdHVDEDGIVGKLRWFLRTVyn--------------------rFCVKNLNS 71  Sulfolobus solfa...
NP_624151     3 NYECKLQiVTPIIMSGARKnl---------lELREQSINGILRWWFRFYg---------------------sLKYQSLQE 52  Thermoanaerobact...
NP_213263     6 QKTLTFEiITPVVMAGTYKde---------pELRIPSIKGMLRWWFRFFy---------------------aSHNQSIDK 55  Aquifex aeolicus...
NP_070693     5 SATFTLEaITPVFMRGANQsk---------aEIRAASIKGLMRWWFRALsg--------------------sYFGNDVEG 55  Archaeoglobus fu...
NP_229592    10 VLEIECKvVTPMFSRGAAEpkwengnrvypfELRPQSIKGVLRFWFRAIaptvidiysleglenlskkekerWEKEKYKG 89  Thermotoga marit...
NP_343389     5 LMSFKLKaIYPLTGGYNRHsine----fyeeNVRPTEIKGLWRWWNRVLfnt-----------------vsyVKEGKLYT 63  Sulfolobus solfa...
NP_578081    12 EAIFDLEaITPLFMRGADArs---------pEFSSASVKGVMRWWFRALag--------------------gYFGNNIEA 62  Pyrococcus furio...
NP_275471    11 TFNIELQiLNEIFTGGPERrs---------eVIRDTGLIGSLRWWYEALirg-----------------vggTACDPSQG 64  Methanothermobac...
NP_377963     5 VMNIEAKaLYPIVGGYNQYpvslk--vgyeePIRSTEIKGLWKWWTRILies-----------------aieRKRHGVTK 65  Sulfolobus tokod...

ZP_00075987  66 EKENDrnnklcpacYLFGCGGWKRRFRLEIEDfgvkepfhlvtldkdevgnn---------------------------- 117 Methanosarcina b...
NP_578859    55 LKEIEn--------QVFGSTKERSRVKISVTPlsspkrlnlkefkdknvgyi---------------------------- 98  Pyrococcus furio...
NP_241193    84 LKEAEa--------KIFGDTNRPSAVKISVSEtgdakwapilerknnrrlhssl-------------------------- 129 Bacillus halodur...
NP_342943    72 YDEADsy-----vfEYLGSGNRKSLYIFKVSDsrsipnkkyeklnrvn-------------------------------- 114 Sulfolobus solfa...
NP_624151    53 LRKREs--------EIFGSTTKAKRFYIKILQepqsrgkaylcmnd---------------------------------- 90  Thermoanaerobact...
NP_213263    56 LREHEn--------EIFGSTEKACQFYMHLKYsqkltdayl--------------------------------------- 88  Aquifex aeolicus...
NP_070693    56 LRRVEe--------YVFGSTKRESRVVVEVVKehveerfcplpmvwkk-------------------------------- 95  Archaeoglobus fu...
NP_229592    90 LKYLEg--------LIFGSQERKSSFSLEVKVegesqalgkymnnrfsft------------------------------ 131 Thermotoga marit...
NP_343389    64 YDSIDrl-----feDVFGSENKKSAVRLEVITdegsdnhfelsnveldnv------------------------------ 108 Sulfolobus solfa...
NP_578081    63 LKEVEe--------KIFGSTRNKSRVFVRAEVedv--------------------------------------------- 89  Pyrococcus furio...
NP_275471    65 PPCEErlhc--dacELFGCSGWSRKFIFRSREesd--------------------------------------------- 97  Methanothermobac...
NP_377963    66 YNDLNkl-----leDFFGSTNFKSPIRVRIEIednfitifkaiwdfiirilenrkvtvksentqnlniadtiiiptinin 140 Sulfolobus tokod...

ZP_00075987 118 -----wwlstifkknfnnnlsfgkfTFRIYPVGRgDKSEIIAQIKAlls----------------imSHVGAIG---AKS 173 Methanosarcina b...
NP_578859    99 ------wfsinllgkrgtithyyppGSRFRVVLEsPSERVIKLATLslw----------------alVSLGSVG---FRS 153 Pyrococcus furio...
NP_241193   130 ----skykyvlfpfedrkrdkhqdhTDYLNTDSPyTFTLHLEYIQFevdninird---evhaalwawINFGGLG---ART 199 Bacillus halodur...
NP_342943   115 ---------viirgkeqenliprdmNFTLEIFRSnDDPKYDEIVVGgvl----------------itIAFLGIG---FSP 166 Sulfolobus solfa...
NP_624151    91 ------------rrkkgekgaavnySERVRTSYApNQEFILNFKFMphfpkehek---elknslmclSLFGGIG---ARW 152 Thermoanaerobact...
NP_213263    89 ----------------amnkrygryNNIKRKALEkNDTFRIDFIYSpfftykke-----lnttlqllSFLGGIG---ARW 144 Aquifex aeolicus...
NP_070693    96 ----------kkgvttrvsqraiapGSKFTLLLTsDDEEVLKLACYsli----------------glVYFGGIG---FRC 146 Archaeoglobus fu...
NP_229592   132 --------ddrlkdtkyalyglydkSGIYEYLQEgKNFIIILQTANdsikgii-------lsllklvSTFSGFG---AKT 193 Thermotoga marit...
NP_343389   109 --------idclkanreekvnldfrDNTLIIEIEgSTKIPISFKSNldidkikd------lvyknklLSFELLG---FKS 171 Sulfolobus solfa...
NP_578081    90 -----------------------kkGNIYRQASSwADKTIIVWSEYvd------------------yFFFSVLD---KRR 125 Pyrococcus furio...
NP_275471    98 ----------------------ktlKVQITELRR-MEDVELALLNKtls----------------iiENYGAIGgklAHR 138 Methanothermobac...
NP_377963   141 ignstifkitennhvirvkrennpeNNTLNITLDlNAKKLTATLNNnqielklrdktldkylrldklSDFLSIPrimLDL 220 Sulfolobus tokod...

ZP_00075987 174 ---QYGFGQFEMEN 184 Methanosarcina barkeri
NP_578859   154 ---RRGTGSMKIVR 164 Pyrococcus furiosus DSM 3638
NP_241193   200 ---RRGCGSLYCKS 210 Bacillus halodurans C-125
NP_342943   167 ---NRGFGRFIPAE 177 Sulfolobus solfataricus P2
NP_624151   153 ---RRGFGSIIVKE 163 Thermoanaerobacter tengcongensis MB4
NP_213263   145 ---RRGFGSIQLKN 155 Aquifex aeolicus VF5
NP_070693   147 ---SRGAGSLKISS 157 Archaeoglobus fulgidus DSM 4304
NP_229592   194 ---RKGFGEFEIVD 204 Thermotoga maritima MSB8
NP_343389   172 ikiDTKISDKEVIK 185 Sulfolobus solfataricus P2
NP_578081   126 ---NRKTKKIDIKT 136 Pyrococcus furiosus DSM 3638
NP_275471   139 ---KYGIIKIKEND 149 Methanothermobacter thermautotrophicus str. Delta H
NP_377963   221 ---LKYNNKGVIVS 231 Sulfolobus tokodaii str. 7
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