Conserved Protein Domain Family
Cmr3_III-B

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cd09656: Cmr3_III-B 
CRISPR/Cas system-associated RAMP superfamily protein Cmr3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex
Statistics
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PSSM-Id: 187787
Aligned: 11 rows
Threshold Bit Score: 203.036
Created: 5-Feb-2010
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9KFY7     17 MVRDGRPFKDSPga---raYSMMDVVPgviagtvrtmlaeqaa----------------kssrvvdyhtfskvpVYGPLY 77  Bacillus halodurans
AAK41929   15 GLRQSSGIVIENv-----dVISAFPSPttilgiigamknakp-----------------sqlsgiddlreaytsLTGNNT 72  Sulfolobus solfata...
NP_377966   1 MLRSSGEFDIETkgpasyaKSLLVPRPstiagmlasllykgsnk--------------dywlddikqnikpisdICGPLI 66  Sulfolobus tokodai...
Q8TVU0     19 FFRRPEPFRAAAes----vAESEGPKPwtvagcvrnallevtdgdlgevleyprklvrsappgsigealgetalFLGTWV 94  Methanopyrus kandleri
O28413     12 LFREPRPFDVNNh-----vARTILPLPqtlagavrsaiyvkygs--------------kvkdligfgkeepefeILGHFF 72  Archaeoglobus fulg...
Q8R6Z6     13 FFGSGRPFNVGDv------VYSIFPHPhtlagaictkihahtkidts-------rilknvygpfierngklyfpKPSNIL 79  Caldanaerobacter s...
Q7MTH3     15 FFGQKKTFGDDNany--fvYSSLFPQQttllgllryqllqiageei---------fkdnkiqdehkageligkqSFSPFV 83  Porphyromonas ging...
Q97WW9     14 MFRSQGEFEPLItgshtaaQSLIIPRPstiagmlgyilfnkss----------------gtgdwlsdltnlldtIYGTFI 77  Sulfolobus solfata...
O66707     13 GFGGLKNFSAGEth----iQKSIFPPPimrff-------------------------------------hifnsVYGVFL 51  Aquifex aeolicus
Q9X2B3     15 GFRETRRFSFSDr------VESVFPSSfpfygavrtallmkn-----------------qkfdpgdveragdvrMFGPFV 71  Thermotoga maritima
Q8U1S7     13 LFRESRPFDAGSes----vARSIIPLPqtvagairtllfykg-----------------lkncvgvgeeepeftLVGIAI 71  Pyrococcus furiosus
Q9KFY7     78 VWKgkp--------ffpLPSDigfyedengalqmnyrqpqplvngqg-ylgigdkgdheslwpakvipqmgkvSSIVPAY 148 Bacillus halodurans
AAK41929   73 LSGd-------------CDSSdnpliwgp-------------------------------------likekdnKIYTPLF 102 Sulfolobus solfata...
NP_377966  67 VKDnyg--------yvpLRIGsvftflkaplk-------------------------------elskcisdkiSDIISFY 107 Sulfolobus tokodai...
Q8TVU0     95 VEVrpgapdrlervwwpCPAHlaryepesggeavdllrveevgdaaiafsghdealrrrygfmtpkpprpgsdVETPGRY 174 Methanopyrus kandleri
O28413     73 YRYdgk--------felLVESphdvtqnlglvkphri---------------------dklgitilmdsegikFRPFNGF 123 Archaeoglobus fulg...
Q8R6Z6     80 GERkkeei----enifhARHYelntklfkkentnad-----------------------sniktfplymgkedIGTFPAF 132 Caldanaerobacter s...
Q7MTH3     84 KDKlqfgiiqslspvfiIDKKkndegkeeyflpvgrrf-------------------qkenekapynllhlscQAGCPPI 144 Porphyromonas ging...
Q97WW9     78 ETNgey--------lfpLRMGnhla--------------------------------------------lvdqQHLINLP 105 Sulfolobus solfata...
O66707     52 YKDgnl--------flpVPSDclvkrkeesgkakis-----------------------plefpplirgdleaYERANGF 100 Aquifex aeolicus
Q9X2B3     72 FENtpegr----khyfpLPRNiyktdsgyrvtpivei---------------------dgvylpwkpeykmdsKESTSGG 126 Thermotoga maritima
Q8U1S7     72 GTEkgr--------iypLPFNiiksekfykvvnp---------------------------grflgklilppkGKYKSGY 116 Pyrococcus furiosus
Q9KFY7    149 L--SLDWMSRWLRGDL--SPKSWtsp----laeWQQLvrdnKLdstdkdvhflpPFALDERDhiaveagtrMAk------ 214 Bacillus halodurans
AAK41929  103 FnkLILDPIEYVKTSL--NENVKvq-------sESLVk---EI-----------GIQIRRMNq--------MNrgs---- 147 Sulfolobus solfata...
NP_377966 108 E--DKGEDYDKIDTKI--SKLMSqd-------wTDIIaiqpRL-----------GIGLDRSRk--------VTk------ 151 Sulfolobus tokodai...
Q8TVU0    175 V--DTGTISKILAGRT--PARRTpdlednvagpGELLrpelHV-----------GVKLVGLKt--------ADe------ 225 Methanopyrus kandleri
O28413    124 L--KFSGLIDYLQGRI--AEDSVve-------rQKIFkkerRV-----------GIALTKAK---------VTk------ 166 Archaeoglobus fulg...
Q8R6Z6    133 I--SIEGLRKWLKGEK--IEIHEil------qyKEIFtkeeRL-----------GIKMDSTVn--------AVgg----- 178 Caldanaerobacter s...
Q7MTH3    145 F--GEYKPKKGLASCWlsSKSHTll------neEDFFtkdeRI-----------GIRKDYEGa--------TNd------ 191 Porphyromonas ging...
Q97WW9    106 I--LLEKEYEQREKGI--YELFYdkn-----klFQIInhqdRI-----------GISIDKSTr--------TVk------ 151 Sulfolobus solfata...
O66707    101 I--SFSDLMNKYAKNI--DGFKIyl-------lEEFLkkesRV-----------GITLDKERr--------VVrsikein 150 Aquifex aeolicus
Q9X2B3    127 L--IELSDLELLRSNT--QGVCKfdl----vsaEKIFkketHI-----------GVAFEENRk--------KVk------ 173 Thermotoga maritima
Q8U1S7    117 V--TESILEKYLKGEL--KEVEEnk-------vIRIEke-kRI-----------GIKLSREKk--------VVe------ 159 Pyrococcus furiosus
Q9KFY7    215 ----dQALFTTQSIVFpp-------dlDMHARVEIpqe-----------aaWPMq-----------------LSTLHSLG 255 Bacillus halodurans
AAK41929  148 --rntIHLFYQKFFGSny-------elEYCINIDDl---------------KKLv-----------------KENVVALG 186 Sulfolobus solfata...
NP_377966 152 ----eGMLYVANYVSIna-------siYVIVNGDSke-------------iKSAl-----------------DGKISTFG 190 Sulfolobus tokodai...
Q8TVU0    226 -----GYLYAARFLRPgrspvdggslvGFLTVLAVpedawd-----dgvleDLPs-----------------PGGRLGRG 278 Methanopyrus kandleri
O28413    167 ----eEHFYQVEMLRFsd-------dcGIAVWVEDg---------------VDFd-----------------DEGILGVG 203 Archaeoglobus fulg...
Q8R6Z6    179 ---eeDALYRIEFMRLke-------dvNLIVWVEFdf-------------eAEEikkagfsdesklrgffnqPPRALKIG 235 Caldanaerobacter s...
Q7MTH3    192 -----DAFFCQRYYRFknfke--vegeKTKVCKQPpvrehdfcfavllethRDIkhe-------------elNKRIVYLG 251 Porphyromonas ging...
Q97WW9    152 ----eHYLYSARYLAFkk-------evNYVIFIDNda-------------iSDKi-----------------NGKIVNFG 190 Sulfolobus solfata...
O66707    151 rkeekGLLYSQDFFRFnd-------gvKLAVLGEInk-------------dIVIs-----------------GKQYFRLG 193 Aquifex aeolicus
Q9X2B3    174 ----eRMIYSISYYRFyd--------gGFFMFTDDer-------------tVELv----------------sKLDGVFLG 212 Thermotoga maritima
Q8U1S7    160 ----eGMLYTVEFLRIe----------KIYAWIEDpgc-----------giKDIl----------------sSYEFLTLG 198 Pyrococcus furiosus
Q9KFY7    256 GKRRLAHFSESQDDQFWqcpealeq----sldesqyvRLVLATPAYFAKGW----KPRWLDDELCtneifakeisrevk- 326 Bacillus halodurans
AAK41929  187 GENRYARVRIDNGNCNFgn----------------gnYAILLQPLLFESDSeyfvRLDNVKGLGCideiygvlvek---- 246 Sulfolobus solfata...
NP_377966 191 GEGRLVKLHILDDEAFSc------------------dKFEDSKPGVLLSPL----PVESATRFIGefs------------ 236 Sulfolobus tokodai...
Q8TVU0    279 RHAWVIPLRAGDWSDDVfpevee--------pegdlpGLYLETPTPFPEGD----VRSSSPGDRLkaeavlvrpgsprdr 346 Methanopyrus kandleri
O28413    204 GERRFVKFEKREEPECItnlrskwkkirdkinetgrlKIYLATPAILGAKG----YSSKLDYDLLgdigiervrsv---- 275 Archaeoglobus fulg...
Q8R6Z6    236 GEMKNAFYEVEEENFVEflrenlg------vsqmvevKCGDIVKVLFLTPG----VFPDFKFSVEgfevfsl-------- 297 Caldanaerobacter s...
Q7MTH3    252 GERQPFLMDLMEVSEETfklniess----tltsdekhYTVVLLSDAMIEPK----LLEGVKFASTevkdfacllthvg-- 321 Porphyromonas ging...
Q97WW9    191 GENRIAKLEVDDYKVDTsi----------------eeEYYLTLSPILIPDE----ALDDLLDNISdyvtmg--------- 241 Sulfolobus solfata...
O66707    194 GEGKIVSFKHTEHINSFlegkiki-------kngnyyKFYCLTHAYINNGI----IESKIQTICIeginfe--------- 253 Aquifex aeolicus
Q9X2B3    213 MKSKWSAVEVEELNTTAfdppd-----------yknvAVALITPAVFDGGG----MPKDKTILGKrvlttag-------- 269 Thermotoga maritima
Q8U1S7    199 GESRVAFVEVDDKTPDIfnrelg---------stkkaLFYFSTPTIGKVGE----IVQELEKRLNakiddyll------- 258 Pyrococcus furiosus
Q9KFY7    327 ----------lqlvwacisrwqpvSGWSYSLKQ---PKAVRRMVPAGSVYFFkvtegnprelar-rgwlntvsdanrRKG 392 Bacillus halodurans
AAK41929  247 -------------gnkidfnnfkvKVVYYALGYgneRRPMLQALPPGTVIKVketc------------------nnaKAL 295 Sulfolobus solfata...
NP_377966 237 ---------------------iigMGFDLKNNR---RKEIVKAILEGSIVINs------------------------IPI 268 Sulfolobus tokodai...
Q8TVU0    347 vlqvelevsevesevladrvietrRVSTWSGKR---ASPDHLAAAEGTVLALgkldvdpgtplllfprmgdedrellASR 423 Methanopyrus kandleri
O28413    276 --------------nfiggkpvifSGWDFVTRK---PKPTRYAVPAGSVYFVefegev-------------kldmpyLKL 325 Archaeoglobus fulg...
Q8R6Z6    298 -----------------aldkytiVGRYSPKLK---ITKTVRAFPSGTVMWFkakedmllmnpa-fivpegnyhsfkIPS 356 Caldanaerobacter s...
Q7MTH3    322 -----------trrfynkkkkreeQNIEEVETA---LSHQHELYARGSVFYFdtkeqan------------qfcedlEKV 375 Porphyromonas ging...
Q97WW9    242 ------------------kvdkisLGFDIANTK---RKEMLTAILEGSIVKRsiidfikk----------einnnllDRF 290 Sulfolobus solfata...
O66707    254 ------------------vewlynGGVEYVSGY---NKPFLEMLRPGSVLILkaknegeiqr-----lnqistnvpiSNI 307 Aquifex aeolicus
Q9X2B3    270 ------------------irkqvvSGWDLRENK---PKKIYHAVSPGAVYYLegkv-----------------nghvLNE 311 Thermotoga maritima
Q8U1S7    259 ----------------vssrptaiSGWDMHEKK---PKGTKFAIPPGSVLFVefkeev--------------evppyIKL 305 Pyrococcus furiosus
Q9KFY7    393 AFDKEDGFGLALWGT 407 Bacillus halodurans
AAK41929  296 GLLSELGFGAIYRVD 310 Sulfolobus solfataricus P2
NP_377966 269 NEYYSIGYGSYVRIF 283 Sulfolobus tokodaii str. 7
Q8TVU0    424 LAFHLSGVGTAYALS 438 Methanopyrus kandleri
O28413    326 GKLTKLGYGLCFMGV 340 Archaeoglobus fulgidus
Q8R6Z6    357 GEQEFIGSNLILIGK 371 Caldanaerobacter subterraneus subsp. tengcongensis
Q7MTH3    376 PNFHTIGYNHAIIIE 390 Porphyromonas gingivalis
Q97WW9    291 TKYEKIGYNTLMNLC 305 Sulfolobus solfataricus
O66707    308 KNFLNRGWNSGIIVE 322 Aquifex aeolicus
Q9X2B3    312 SKFTDFGFGRCIFMK 326 Thermotoga maritima
Q8U1S7    306 GKLKKLGYGLALGGI 320 Pyrococcus furiosus
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