Conserved Protein Domain Family
Csm2_III-A
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cd09647: Csm2_III-A 
CRISPR/Cas system-associated protein Csm2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-A
Links
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Statistics
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PSSM-Id: 187778
Aligned: 12 rows
Threshold Bit Score: 65.4628
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAM02528      68 VSNSQLRRLYAEITNVRnetrra-----regkgSWEDVVAALGKARVVLAYTKGRqg--kEFEGLYEVLDEALRKATKiv 140 Methanopyrus ka...
Q59064        42 IPATKMRDFYDYVLRIDe---------------KNENWYKELVLLKPKLAYNYGKetnrrKKEALEKLAGTFSEIIDKid 106 Methanocaldococ...
AAB85570      47 LKTTQLRKFFSAIRSMEkk------------adSWKSIEADFYLLKPQLANARGRd---lIPEGFYEVMKKMMDKVDRgd 111 Methanothermoba...
AAM05336      73 VTSTQLRRLLNGFQIVKek------------tkKSGLKTTHISKLKLNLAYVTARn---yNIKRLTDLLDSLLDRERFpe 137 Methanosarcina ...
AAS82433      35 LKSSQFRNYFAELRALEnrferer--rkegeelAFARLVPQLELLRAKLFYNTRSqgplrDAKEFVEFMEEALEAGKRsp 112 Thermus thermop...
CAD84033      39 NKSTQIRRFYDELVGWQerig--------tdeqKFRDYAAFIHMLNAKAAYAQGRn---lVTREFVQWLRDCIKQIDGpr 107 Nitrosomonas eu...
YP_001634197  53 LTTSQIRNIFGEVRSIEqevlp-------tdqqLSLDVQRRLLMLKPKMAYQVGRf---sNNQALQELVETLSDAIGLig 122 Chloroflexus au...
NP_142165     60 LKTNQVRRVLEMARDIElki----------rvgRAENITLDVTRMRFLLAYTVGRag-rrERSSIEAFYRVLDPMLKQms 128 Pyrococcus hori...
NP_229607     31 LKTNQLRKFHGHLTKIWsnyiykkkdyrdnpekFNEEILNELHFMKIFLAYQVGR-----DIEGISELKEILEPLIDEik 105 Thermotoga mari...
NP_110630     53 TTQNQIRKFYDYTIKINs--------------kDEKKAKIKLAMMMPQIYYAIQRkv-isSDSPFVKFLEDSIDKLNKte 117 Thermoplasma vo...
NP_217338     27 LTTTQLRVLLSLTAQLFdeaqq------sanptLPRQLKEKVQYLRVRFVYQSGRedavkTFVRNAKLLEALEGIGDSrd 100 Mycobacterium t...
YP_190003     30 LTTSKLRNLMEQVNRLYtiafn------snedqLNEEFIDELEYLKIKFYYEAGReksvdEFLKKTLMFPIIDRVIKKes 103 Staphylococcus ...

AAM02528     141 edsedddvrrraIEALHFLAEGIVAFHRFLG 171 Methanopyrus kandleri AV19
Q59064       107 nd-------lnkFKNFKTFFEALVAYHKIYA 130 Methanocaldococcus jannaschii
AAB85570     112 dde-----kienFRVFVRFLESIVAYHKFYN 137 Methanothermobacter thermautotrophicus str. Delta H
AAM05336     138 ntd-----ltehFDSVVTLLEGVIVYHKLAG 163 Methanosarcina acetivorans C2A
AAS82433     113 ----------kdFEAMMKYVEAVLAYFYALA 133 Thermus thermophilus HB27
CAD84033     108 -----------tLNHFRLHFEAMIGFLKAIR 127 Nitrosomonas europaea ATCC 19718
YP_001634197 123 nd-------knrFQTFVNLFEAILAYHRRYG 146 Chloroflexus aurantiacus J-10-fl
NP_142165    129 eded---farryFGKFFDFLQAVVAYHRFFG 156 Pyrococcus horikoshii OT3
NP_229607    106 t--------pdeFEKFKKFYDAILAYHKFHS 128 Thermotoga maritima MSB8
NP_110630    118 df-------enaFNRFLNVFQAIVAYSKKSR 141 Thermoplasma volcanium GSS1
NP_217338    101 -----------gLLRFCRYMEALAAYKKYLD 120 Mycobacterium tuberculosis H37Rv
YP_190003    104 k---------kfFLDYCKYFEALVAYAKYYQ 125 Staphylococcus epidermidis RP62A
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