Conserved Protein Domain Family
Csn2

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cd09644: Csn2 
CRISPR/Cas system-associated protein Csn2
Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.
Statistics
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PSSM-Id: 213407
Aligned: 22 rows
Threshold Bit Score: 173.156
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
tetramerputative DNA
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 ## ### ##  #                              # #         
NP_970944     1 MKLVHPDIKNQIIFSeNKVNVLTIENKTFFTEFVSELFSQY-SGNEGKFILSEDDKELSIPkTCELILNPINLDINNKQN 79  Treponema dentic...
ZP_04777184   1 MKIINKNWQRKIEIEdNIIYTLVFENKKYYRENIIELVNQH-KSNEGSYILSNDNKEISFDkNSYIITDIFNIDINNKKV 79  Gemella haemolys...
ZP_08706667   1 MKLFYQDSTIEIDLNsTKVNYLCIEKHSVFRHMILELYEQY-NGGEGPWIYNVNAERIAIDkSFHIIMNPIQVDVNSKTI 79  Veillonella sp. ...
ZP_08710871   1 MKVLYALSDMEIELSeNYVATLYIENMLYFRHILQELAAQI-AGAEGHWVFTQAQQQLDCKkDVILVTDLFHIDGNQKSV 79  Megasphaera sp. ...
ZP_08029932   1 MKLANSKFFETLDFE-KGSQTLVVENVELLRTIILQLKFQI-NNKIGDFILSDKDAILDISkNILLITDVFEISSLSKQL 78  Solobacterium mo...
ZP_03931364   1 MILTSEYLEKSFEIKeQRLNTIVLENKIYYRKIIQAVRDTI-NLDLKEFVLYEDEEEVKLNkIAELITNVFNINPNDNKI 79  Anaerococcus tet...
ZP_07398874   1 MNLVTKYLENSLEIKsKTINTLVVEDIRYFSIFLKGLIEST-EIESDEFELIEDYKTVDMTkYVEIIFDIFNLEANSANI 79  Peptoniphilus du...
ZP_07697982   1 MKLLSNDLEKTFSLNqHVLNTLVIEDNTFFREFISKIVHFV-ENDSNELEIMDEDEEISPT-KCEIIVDIFRANPNNTKI 78  Lactobacillus in...
ZP_06258916   1 MKLMYQDSTLDFEVSsDKVTVISFENCKVFRRMVTELDIQC-DGGEGPWILNDNNKAFNLDkYGHIILNPLYVDINSKAL 79  Veillonella parv...
ZP_03989812   1 MKLLIPDYQINLTWKdYSVPTLIIENPHQFFEIINDLVLQIkEGNNGKAIYSDKDKPVPLEkAFEILIDYLSIDSVPKML 80  Acidaminococcus ...
Feature 1          #   #   #       ## ##  ## ### ####      #### ##  ### #####   #####     #  #  
NP_970944    80 lNKIYSILKQSISDeynyLKTCTIKSEILKHIDDVLLSLDIplKRSEELDlISIFKAVNISFEtEYTNLLEKIIDYISAS 159 Treponema dentic...
ZP_04777184  80 lSKIYSSLLKEIVEd--iSSYNELSTNIRVYFEKLIFNSSLeiEQGEEIDmSSLLKLGDFKIHvENDDILENFVKFLKVL 157 Gemella haemolys...
ZP_08706667  80 lTKLNANLVKESNLm--mEDLHDVVCKLHQFFYKLEFGANIalEHKEEIVaADLIKLGGFKIHeSDTDTVARLIDYIDIV 157 Veillonella sp. ...
ZP_08710871  80 lSKLHAYLTSIAEEe--sELLYEINDKLRSLYTEITLQAPVevGYKAALSaQDLIKAGDFKFEwGEMELLERLVTYLDII 157 Megasphaera sp. ...
ZP_08029932  79 kNKLQQYVESNYDNd---DLYQDLYQKLIDFGNDLINSSPYplCFNQSITkIDMIKLLDIQLEhNYSSLLEEIVDYIDIF 155 Solobacterium mo...
ZP_03931364  80 lAKLYEKLGQEITYediyCYNRNFKSALSKLLEELSMLSEYd-FKYEDVDyKYIFKAVGLEIDtKFTGLMANIIEYLDIS 158 Anaerococcus tet...
ZP_07398874  80 lKKMYSELEEDLNTqevyTKKVELESIIANITDELIYRSRFs-LKAGGINyQNLFKAIEIEFDyEKNSVLERLIEYIKVT 158 Peptoniphilus du...
ZP_07697982  79 lTKLYSNLISGLSSderyQDSINFESQLYSFMDKIAFDCDYh-LTYGDIDyKSIFKALNLSIDtDIKGLMSNFVSYLDLS 157 Lactobacillus in...
ZP_06258916  80 lTKLQNQLSKEALLm--tEEVADIVNRLHAFYYSLEFGYPLsiQHKLEIGtAELIKLGSFNFEfNRTGDIMDFMSYIEVV 157 Veillonella parv...
ZP_03989812  81 lTKIQKRMEFQATNgplfENTQILLAQMEHLAEEIAMSLDLe-IDCEKLTvGNLLKALGITINlDYNGLGEKIFVLMDLI 159 Acidaminococcus ...
Feature 1        #         ##  ##           #               #  #                    
NP_970944   160 VELNQIKCFIFINLKQFLHFKDLSELYKFACYIKTNLFLIEg--SYTSTKEDCEKs--YIIDKDLCEI 223 Treponema denticola ATCC 35405
ZP_04777184 158 TELCCFKIIFVVGLHTVFTQEEIIEIYKEVCLNKINIINVEyqqFNNLSAKNYKEi-vYIFDKDNCEI 224 Gemella haemolysans ATCC 10379
ZP_08706667 158 HELLDPDLFVIMNIDLYLDLEELDQFFNTILAKQLCFLCISs-gSYGLQDIDKSLingYTLDNDFCLI 224 Veillonella sp. oral taxon 7...
ZP_08710871 158 CDLLKSKLIVLVNVRKYMTEEELKLVYEHCIRKKIPIFCIEs-gYTCHSVDELLEk-vYTIDKDLCFI 223 Megasphaera sp. UPII 135-E
ZP_08029932 156 SQIIKTKLFVFISLRSYLTGEEFNNFIKIMDYKGIRILLIEr--YLSLDNSIVDNv--QIIDKDLCVI 219 Solobacterium moorei F0204
ZP_03931364 159 HKLLNKKIFFIVGIDDYFEERELYDLNEYLCYNDIIVICLQn--RLDRDLLPNENl--RIIDEDLGEI 222 Anaerococcus tetradius ATCC ...
ZP_07398874 159 SELLKTKVYIIVNLDSFLSEEELVELEKFLLYNDIKVLALQn--AIRREVIPSENl--RIVDKDLCEI 222 Peptoniphilus duerdenii ATCC...
ZP_07697982 158 YKLLGKKIYFAVNLNTFFSQKDMGVLNDYLRYNNIVLVCLDn--SLKRTLFEDENi--RIIDQDLSEI 221 Lactobacillus iners LactinV ...
ZP_06258916 158 DKLLSPMVYIMVNLDLVLNDDEINAFYHNMLSRQLRLVCLTt-gSFVKENLDKSLingYILDNDFCVI 224 Veillonella parvula ATCC 17745
ZP_03989812 160 SRFEGDKIFILVNLRSYLSSEEIQLFVDTALAHDLKFLLID---NRRYPLFHQEKr--VLIDNDLCVL 222 Acidaminococcus sp. D21

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