Conserved Protein Domain Family
Cas3''_I

?
cd09641: Cas3''_I 
CRISPR/Cas system-associated protein Cas3''
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I
Statistics
?
PSSM-Id: 193608
Aligned: 306 rows
Threshold Bit Score: 54.2025
Created: 4-Feb-2010
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
YP_525131     10 KADGAIQLLPDHLRGv-----------ARLTSEFASKIGlpqq----------gelIGLLHDLGKYSAEFQNYLksavel 68   Rhodoferax fer...
YP_001229607  16 PEGKPGISVYDHMLNvgcv----arciAETSPKILERFHless---------mvgaLAALHDLGKISPGFQRKCdawlee 82   Geobacter uran...
YP_001534548  23 AAGRPSHHLAHHSMDvaavle-gllrhPVISARAAAAAGiylkpea----vawlsaFAFLHDIGKLSPRFQAKVwpdgi- 96   Dinoroseobacte...
YP_113419     19 GQTDQWLSLSQHSLDvasv-----faaLAELPAFHHKLKvssgieldgiqlqrlavIALLHDVGKANLGFQDKVfdakap 93   Methylococcus ...
YP_741798     33 GEVEAWLPLADHCTDvafvfl-alcrtNAAHRALSQAIGhaptpvh----lerlaaLAFLHDIGKCNHGFQAKArrepr- 106  Alkalilimnicol...
YP_425432     35 SRDGESHHLAHHCADvaac-----feaMAALPGVRSRLEraaggplsevdiarlavLVFLHDIGKLHPGFQAKAwpeglw 109  Rhodospirillum...
YP_002299513  19 KARSGLHLLVFHLLDvaavldagferrPALLARLADGLGldrdaa-----ramlltVLALHDIGKVATGFQASDreaaga 93   Rhodospirillum...
NP_662847     35 SRSVAGRTVLDHCRIa-----------GEVARELIARSPaflresf---fpdgsalVAASHDIGKVSPTFQKKIytaign 100  Chlorobium tep...
YP_745513     22 AEPDCWLPLITHLGDvgdcfe-allnlPLYRARLATIIEkepdrvt----iqrlcaLAFLHDIGKLSSGFQGKIltk--- 93   Granulibacter ...
YP_002479507  12 ASNLPGISVLLHGRFa-----------SAVGRCLVRAMFppqwqdl----havvafLLSIHDVGKISPQFQGKCllwleq 76   Desulfovibrio ...
YP_525131     69 lnpded---efvdakglkgkvDHSTAGAQLVWqelakfgq------------lgqivaqILALCIASHHSGLidclsade 133  Rhodoferax fer...
YP_001229607  83 yglnii---arngcwdtamesDHGKISHAAIHaflietg-------------mdrktakFASAVLGAHHGRLtppn---- 142  Geobacter uran...
YP_001534548  97 ----------------aggtaSHLSEGLIWADrlldgqplldgaagplvaplvaggmekAWFGALLAHHGRPmafd---- 156  Dinoroseobacte...
YP_113419     94 raghvr----elaplfdapelCEAFATALDLDeiadwfd--------------ppdsieQFLLAAWSHHGAPvr------ 149  Methylococcus ...
YP_741798    107 ----------------dtaghVHEISALLYDPdlqkrlldslgfd-eiaswfddaegtlGMLLASISHHGKP-------- 161  Alkalilimnicol...
YP_425432    110 ----------------tgprhGHMREGVEIFQhqappdivrslh----lekliewgvdwNLLFSVLAHHGRPvs------ 163  Rhodospirillum...
YP_002299513  94 lgla--------lagqermreHHSAVGQALLLrlltrhragsgl---pdggaaalpvmeALFALSTGHHGRPvlglpkvs 162  Rhodospirillum...
NP_662847    101 adptildvlndvdseieknwgGHAGVSQCALEale---------------------agkDIAAIAGCHHGYApklagkta 159  Chlorobium tep...
YP_745513     94 ------------------arkGHLLEGYHVLWrkeaglqdalgl---redlsqwgeamrSLFLAALAHHGRPi------- 145  Granulibacter ...
YP_002479507  77 nglare----aannawpsfttTHACLSQEILDyfwqqkg-------------llsesysLWSAIVGAHHGKWakakphhy 139  Desulfovibrio ...
YP_525131    134 nslgddsfskRMNKQDGRSHLDEAqtvaddlvllrahalmaepsmIHAIQSLVGKIIRlspekndrnivtqqhigllvrF 213  Rhodoferax fer...
YP_001229607 143 -------drgYRPQKLISDSASKIdwd---------------nerKENARMTWAHFSGssaefsls------ddspalwW 194  Geobacter uran...
YP_001534548 157 ------sfvyPPNPRDVFRDVPGYdwrae------------drrmGAALRQWFPEIAIdlavlr---------shrlvhL 209  Dinoroseobacte...
YP_113419    150 ---------fQTGDQTGNYYLARTrwwrad----------atrdpMQAVAELMRIAKQafpdafkrgvaripgrarlqhR 210  Methylococcus ...
YP_741798    162 ----------IKLDHTETNRYRRYwlprd------------gidpLEDLTNLTLTVRQafpqaftgdasplsptpelqhR 219  Alkalilimnicol...
YP_425432    164 ---------mEGGRPPCWRAVAKAgydp--------------gaaSAEVGGLIPRWFAgafvqdgrp---lpsmvgfahL 217  Rhodospirillum...
YP_002299513 163 --llmetgalTDDDMDIAATLVRA---------------------VAGLFGWRQGIPDreglt------------rlspL 207  Rhodospirillum...
NP_662847    160 daeafggaawQRQRARLLERLAEAt--------------------GERFPKIRNLLHAr--------------------V 199  Chlorobium tep...
YP_745513    146 ---------mVVGQEPVQADWAARtgy----------------npTEAARAIGQACRTrypdafgpgp-hlphhtelqhF 199  Granulibacter ...
YP_002479507 140 gqvsppclapSPSVDWLREELNFVay-----------------qwEQHANTELPPVTGasa---------------slyA 187  Desulfovibrio ...
YP_525131    214 LFSCLIDADRIDTADFENP 232  Rhodoferax ferrireducens T118
YP_001229607 195 LAGLTSVADWIGSDERFFS 213  Geobacter uraniireducens Rf4
YP_001534548 210 FAGLLALADWIGSDDGAFP 228  Dinoroseobacter shibae DFL 12
YP_113419    211 FAGLVMLADWLGSHQAFFP 229  Methylococcus capsulatus str. Bath
YP_741798    220 FAGLVMLADWIGSHEGFFP 238  Alkalilimnicola ehrlichei MLHE-1
YP_425432    218 FCGFVSLADWLGSTRAVFP 236  Rhodospirillum rubrum ATCC 11170
YP_002299513 208 LNGLFTLCDWLGSSDHFAC 226  Rhodospirillum centenum SW
NP_662847    200 LAGLTSVADWIGSGATFDD 218  Chlorobium tepidum TLS
YP_745513    200 FAGLVALADQIGSRECDFP 218  Granulibacter bethesdensis CGDNIH1
YP_002479507 188 SAGLLVLADWIASDEHHFP 206  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap