2YZS


Conserved Protein Domain Family
Cas1_I-II-III

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cd09634: Cas1_I-II-III 
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CRISPR/Cas system-associated protein Cas1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain
Statistics
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PSSM-Id: 187766
Aligned: 141 rows
Threshold Bit Score: 87.6708
Created: 20-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YZS_A         2 RVYYINsh---gTLSRHEnTLRFEna-------evKKDIPVed-----------vEEIFVFAe--LSLNTKLLNFLASKG 58  Aquifex aeolicus
Q5L8F9         4 KTLYFGnp--vyLSLRNAqLVIKLpdv------ekATVLPEtlkkqaevtkpiedIGIVVLDnkqITITSGVLEALLENN 75  Bacteroides fra...
YP_001411378   4 KTVEFAtpg-trLSVANKqLVIERpd-------lpKATLPIe------------dLGVVIVDdlrATYTQAVFIELLEAG 63  Parvibaculum la...
ZP_01089722   39 RTVEISqep-fhLGLRHKqLTFKReg-------avVHTIPCe------------eIGVVVIDhpgTTYTHAALRQLAASD 98  Blastopirellula...
Q6NKI2         6 RVVDLIdfd-gkVSYQRGqLAITSdsg------elRATLPLa------------qIAVVLIGn-kLIISGAVLVKLSEYD 65  Corynebacterium...
Q0BRF6        20 GLLYLArg--qlVARDGT-LAFLRgpeedetlpsgEYGIPVq------------sISMILLGp-gSTVSHDALRLLARAD 83  Granulibacter b...
Q5NPQ6        39 NIYYLEhc---rVLVNGGrVEYITdrgn----kslYWNIPIa------------nTTTILLGt-gTSITQAAMRELGKAG 98  Zymomonas mobilis
ZP_00134608   22 NIYYLEhc---rILLNGGrVEYVTdkgn----eslYWNIPIa------------nTICLLLGs-gTSITQAAMRELSKAG 81  Actinobacillus ...
Q4J7P5         2 SILVIKna---tIMRKGSdLQMTWsvgk----nltVSSLDL--------------ELVVIVGn-nVRLTSEVILFLSSLN 59  Sulfolobus acid...
YP_920721      2 RLLVLRgvdevtVSSRST-VVIKSgn--------rVFERALrd-----------vDAVLVVGs-gIKISSSLPPVLALHG 60  Thermofilum pen...
2YZS_A        59 IPLHFFNy--yGYYTGTFYPress-----vsghLLIKQVEHYlda-----qkRLYLAKSFVIGSILNLEYVYkisadtyl 126 Aquifex aeolicus
Q5L8F9        76 CSVITCDs--rSMPVGLMLPlygnt----tqneRFRKQLDTSlp-------lKKQLWQQTIQAKINNQASVLkdcmdeev 142 Bacteroides fra...
YP_001411378  64 ATVMVTGr--dHLPAGMMLPldahh----iqteRHRAQVEASep-------tKKRAWQALIRSKIAQQGIVLahftgehg 130 Parvibaculum la...
ZP_01089722   99 AAVVICGa--nHLPAAILLPladhs----evvwRLVEQIEAPkp-------lCKRLWRQIVRAKIDAQASVLpddcpgrq 165 Blastopirellula...
Q6NKI2        66 IAVLVCDwr-rVPVAGSFSWneht-----riaaRQRAQASLSlp-------rQKSAWAQIIKAKILGQARTAaqlgfdat 132 Corynebacterium...
Q0BRF6        84 TALAAVGe--dGVRLYTAPPlgpd------rsaVARRQAILWadp-----kkRVDVARRMYAWRLGEVLPHRd------- 143 Granulibacter b...
Q5NPQ6        99 VLVGFCGg--gGTPLFSANEqetdvlwfspqseYRPTEYVQAwvkfwfddekRLRAAKALQLARSSRIKEQWlkpslgkd 176 Zymomonas mobilis
ZP_00134608   82 VMVGFCSgggtPLFNGTEAEigcdff--spqseYRPVEYLQQwcrfwfddnkRLNSAKTLQLARLQLLLRTWnkfdweya 159 Actinobacillus ...
Q4J7P5        60 IPVLVHGk---RNDVVLVSPflns------lvnVRRKFYTLSdd-------mKLYLARKFIKGKILGMINVAkyfmyltk 123 Sulfolobus acid...
YP_920721     61 IPLSILAk---GHVAVLLNPvgtk------ynnYRALQYTLPkn-------kALAIALEYLKSRVRGMASIIrnrggrlp 124 Thermofilum pen...
2YZS_A       127 n-----------------kvketnsiPELXSVEAEFRKLCYKKLeevtg---------welekRTKRPPQNPLNALISFG 180 Aquifex aeolicus
Q5L8F9       143 kc--------------mriwatnvrsGDPDNLEARAAAYYWKSLfsd-------------vdsFTREREGIPPNNLLNYG 195 Bacteroides fra...
YP_001411378 131 gl---------------lpmarrvrsGDPDNLEAQAAQRYWPRLfg---------------kdFRRDRDLEGVNALLNYG 180 Parvibaculum la...
ZP_01089722  166 kl---------------ksliplvkpGDAANVEARAAKTYWQFWype--------------agFRRDADSDGVNALLNYG 216 Blastopirellula...
Q6NKI2       133 dl---------------knlaravrsGDVDNREAMAAKRYWEIIsaed------------dfrRLPGLAATGWNGALDYA 185 Corynebacterium...
Q0BRF6       144 -------------------------iTVLRGIEGARMKEIYRLAaqragiv-----whgrrydRANPTAADLPNQALNHA 193 Granulibacter b...
Q5NPQ6       177 gflpderrlsallhqsehaierasdiATLLIEEARLTKALFKLAsetvgy--------sdftrSKRGTGIDPANRFLDHG 248 Zymomonas mobilis
ZP_00134608  160 qdkltal-----vqhyqeeftnvkdsQSLLAAEGRLTAKLYALAnqatl----------ndesFKRESGKEGANQFLDHG 224 Actinobacillus ...
Q4J7P5       124 vpvei--------dlelkqidntksiDELRSVEAEMSKACWEQLrkflp----------psftGRKPRNEDEINRAVDYA 185 Sulfolobus acid...
YP_920721    125 alpep--------pdpalyedparleSDIRSWEAAASNTLWDEVfklldpsaarelrerygfaGRKPGHPDPLNKAISAM 196 Thermofilum pen...
2YZS_A       181 NSLTYAKVLGEIYKTQLNPTVSYLHEpSTKRFsLSLDVAEVFKPiFVDNLIIRLIQENkidkthfstelnxtflneIGRK 260 Aquifex aeolicus
Q5L8F9       196 YAILRAVVARGLVISGLLPTLGIHHHnRYNAYcLADDIMEPYRP-YVDELVFSLIQEYgknae--------ltkemKTRL 266 Bacteroides fra...
YP_001411378 181 YAVVRAATARATVAAGLIPSLGVFHRnRANPFcLADDLLEPYRP-YVDWRVRLLANQMgeeap--------slddrDTRA 251 Parvibaculum la...
ZP_01089722  217 YAIARAAIARAIVSAGLTPALGLHHRnRSNPFcLADDLIEPFRP-MVDERVRELHRQGyds------------ltqECKG 283 Blastopirellula...
Q6NKI2       186 YTVLRGHGMRAICSAGLVGTLGVFHHgRGNQFaLVDDLIEPFRP-AIDYAVFSIVSNSqel-------------dkETKR 251 Corynebacterium...
Q0BRF6       194 ATAMEAAAAIACAAVGAIPQLGFIHE-DPGQS-LVLDISDLFRDtVTIPTAFAAAKLAe-----------------RGHE 254 Granulibacter b...
Q5NPQ6       249 NYLAYGLGATATWVLGIPHGLAILHG-KTRRGgLVFDVADLVKDaTILPQAFLSAMAGde--------------esSFRQ 313 Zymomonas mobilis
ZP_00134608  225 NYLAYGLGATACWVLGLPHGLAILHG-KTRRGgLVFDAADIIKDaIILPQAFISAQNGdn--------------ekQFRQ 289 Actinobacillus ...
Q4J7P5       186 YSVIYALCTHSLIASGLDPYGGLMHVeYPGRTaLTYDFSEMFKP-VAIHSVIAVSRKVklkl----------dnsgYLSK 254 Sulfolobus acid...
YP_920721    197 YAVLYTLSTKALVAAGLDPTYGFLHRtQYSVP-LAFDYAEAFKP-LAVEAALDLVNEEglptlsedg-dldkdslnKAMK 273 Thermofilum pen...
2YZS_A       261 VFLKAFNellettifypklnrkvshRTLIKLELYKLIKHLLE 302 Aquifex aeolicus
Q5L8F9       267 LTVPTLEviigg--------krsplMVAVGQTTASLYKCFNG 300 Bacteroides fragilis NCTC 9343
YP_001411378 252 ALLSIFNetvlvg------grrmplLLALHASAASLCRALTG 287 Parvibaculum lavamentivorans DS-1
ZP_01089722  284 ELLKLLArqtsld------gekgpfMVQLHRMLGSLVRCLRK 319 Blastopirellula marina DSM 3645
Q6NKI2       252 QLVAAVEepfns--------agqsiPTVFTAFAQQYGRYVEG 285 Corynebacterium diphtheriae
Q0BRF6       255 NIERLTRrqtgr---------vlaeRSVIPKMIERLKQLFEK 287 Granulibacter bethesdensis CGDNIH1
Q5NPQ6       314 KSIAALThs--------------esLDFMIDTIKKIALSMEA 341 Zymomonas mobilis
ZP_00134608  290 ACINNLIrf--------------eaLDIIINTLKQLASEGAN 317 Actinobacillus pleuropneumoniae serovar 1 str. 4074
Q4J7P5       255 ESLGHLTkhlye--------tlhkgKRSVRGQIYSMGMKTKN 288 Sulfolobus acidocaldarius
YP_920721    274 RLYRYLSakhre--------tgktpYQQIHLKAFCLAKHLEG 307 Thermofilum pendens Hrk 5
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