Conserved Protein Domain Family
DOMON_murB_like

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cd09627: DOMON_murB_like 
Domon-like domain of UDP-N-acetylenolpyruvoylglucosamine reductase
UDP-N-acetylenolpyruvoylglucosamine reductase (murB) catalyzes an essential step in peptidoglycan biosynthesis, the reduction of UDP-N-acetylglucosamine-enolpyruvate to UDP-N-acetylmuramate. A subset of these FAD-dependent enzymes contains a C-terminal DOMON-like domain. DOMON domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes; initially DOMON domains were suspected to confer protein-protein interactions. The DOMON-like domain in murB may bind a heme.
Statistics
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PSSM-Id: 187685
Aligned: 30 rows
Threshold Bit Score: 120.502
Created: 16-Mar-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative heme
Feature 1:putative heme binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_662118    336 PRVLLQGEALDyfcrdavfPAGIAVEVGQLIpldear-------kapdrpFIRWTTRDEsgvafslh----pdapvgaFV 404 Chlorobium tepi...
YP_379730    355 PRQLMRGALMGyarfdrefPTGVMVEVEQLCarseaa-------tnpsapFMRWRTYAApdsslftl----kapepaaFT 423 Chlorobium chlo...
YP_375019    342 PRVLLRGPLTGypgremafPSGIEVRLEQLMplahaa-------iacdrpFIRWSTSSPlpegfmatp--engpdadgFM 412 Pelodictyon lut...
YP_001130355 351 HATAAFPRILIeg----plASAARVSVTQLIslhear-------lqpdkpFLSWSTALKpgehvflp---vpeaprgaFI 416 Prosthecochlori...
ACF43566     336 PRTLMHGPLVGysgldrefPASVFVSVEQLLslqdaa-------adpaapFLRWTTLGKyealfvvkp--psvipagsFT 406 Pelodictyon pha...
EAT58546     339 PRTLLNGPIVGysaldrelPATAFVKVTQLRsladga-------sdpeapFLRWTTMHTdpelfackp--pktghggtFV 409 Chlorobium ferr...
ABL65288     342 PELLLYGPLTNysdeslsfPGGLFVSVEQLLslddav-------cdpeqpFLRWSTIAVdasvfarlp--gaaigdngFT 412 Chlorobium phae...
ACD90261     342 PQTLLHGYLTGyfgengsfPPDISVHVEQLHsiayae-------snplmpFLRWTTRADsgplsaerprvagatpsgtFV 414 Chlorobium limi...
EEV22989      10 ALTSAAEPLTVsa----ilDYQLLVHVVADSkfltllfdathpkitdsqtALQAGLWANfptfspl------alqrvmRQ 79  Enhydrobacter a...
ABE75800      14 LADDAQQLGVTvkv---lqQISVQVSATLVAqpe-------------aylQLQYHVTLPseslaalltwpkwqadkvgFK 77  Psychrobacter c...
Feature 1               # ##                          ###                                        
NP_662118    405 DRLWEHNVSELFIGQGg----------------gSGQYLEFEVTPEGHWLaIRFDAPRQrtagheipseELWRSq----- 463 Chlorobium tepi...
YP_379730    424 DGLWRYGVSELFISSVt-----------------DGGYLEFEMTPNGHWVaLRFSTPRQraagyetlsaALWQGn----- 481 Chlorobium chlo...
YP_375019    413 DRLWEYGASELFIGGG------------------NGPYLEFEASPSGQWLaIRFEGPRRrtpgqerpsgEHWRDr----- 469 Pelodictyon lut...
YP_001130355 417 DGLWNYGVSELFIGNGk----------------dEGRYLEFEMTPAGQWVaLAFDGARKraegyevltpEPWVDg----- 475 Prosthecochlori...
ACF43566     407 DGLWHYSVSELFIASGd----------------pAGGYLEFEMTPDAHWVaLRFEAPRKrergcevlspEPWEKq----- 465 Pelodictyon pha...
EAT58546     410 DGLWQYGVSELFIGEGg----------------aGEGYLEFEMTPEGHWVaLRFEGPRKravgytelsaDPWNRg----- 468 Chlorobium ferr...
ABL65288     413 DELWQYSVSELFLGHGe----------------aEKEYVEFEMTPDGGWVaLKFSHRRKrangfeipvqEPWERh----- 471 Chlorobium phae...
ACD90261     415 DELWKFPVAELFIGYGv----------------rGTGYLEFEMRPSGDWVaLRFSDRRMreagfavlssESWSGd----- 473 Chlorobium limi...
EEV22989      80 DYLWQADCFECFIAKDsq---------------aDSPYLEVNLATNGEFNiYYFDSYRTpn-------aLPPRRlpikal 137 Enhydrobacter a...
ABE75800      78 DYLWEQTCLECFLAGSlissssskdndkspktnmTMSYIEINASPEGQYAlYEFDSYRSp--------tTLPPRplmyad 149 Psychrobacter c...
Feature 1                                                                                        
NP_662118    464 ------------------------------------ATPFASEk-----GFGIELSYALLEPfih------ddtLRLQCA 496 Chlorobium tepi...
YP_379730    482 ------------------------------------ITVQQGAg-----WFGMELSWELLAPfina-----egvIALQCA 515 Chlorobium chlo...
YP_375019    470 ------------------------------------VVVEFGDg-----HFGMTFTYGLLGPfiepek-ggggvLPFQCC 507 Pelodictyon lut...
YP_001130355 476 ------------------------------------LRLQTLEg-----SFGMSFSFSLLEKffdgi---gdgvLSLQCA 511 Prosthecochlori...
ACF43566     466 ------------------------------------VRMVQGEg-----QFGMELSWELIEPfvt------gelLLLQCC 498 Pelodictyon pha...
EAT58546     469 ------------------------------------LQQVHDEa-----VFGLEFTYALLQPfla------ggrLSLQCA 501 Chlorobium ferr...
ABL65288     472 ------------------------------------TTRFHDPn-----RFGMTFSYSLLEPfiv------drtLAMQCA 504 Chlorobium phae...
ACD90261     474 ------------------------------------VDRFADRd-----GFGMTFSFRLLYPyle------kntLSLQCC 506 Chlorobium limi...
EEV22989     138 tygedinffsqavtqdtelalvfwcsaspmllthvrAVQQQYAfsvgtfRVGMTFAKSALDKlvga-----ngnYALNPT 212 Enhydrobacter a...
ABE75800     150 gqtraa-------------------inwidgnnpklLTHEPYHh-----QRSFRMPLDSLTSlnrksdysndalIKYIHP 205 Psychrobacter c...
Feature 1                               # #        ##   #    
NP_662118    497 VSLGDgr-----------ygLFPWWRGEGA--PDFHQPERYCVV 527 Chlorobium tepidum TLS
YP_379730    516 GSSGRge-----------fgLFPSWATPSTp-TDFHQPQQFYPI 547 Chlorobium chlorochromatii CaD3
YP_375019    508 ASSCEgs-----------pgLLPWWNEAPDp-PDFHRPERFFRV 539 Pelodictyon luteolum DSM 273
YP_001130355 512 SSIEGgt-----------tdLFPSWHNAPVp-ADFHCPERFFSI 543 Prosthecochloris vibrioformis DSM 265
ACF43566     499 ASSGKge-----------yaLFPWWQHPSLp-ADFHQPAHFFRI 530 Pelodictyon phaeoclathratiforme BU-1
EAT58546     502 LSTGRge-----------ygLFPWWNNPKKp-ADFHQPDRFFRV 533 Chlorobium ferrooxidans DSM 13031
ABL65288     505 ASIGEsr-----------ygLFPWWKSPIGt-PDFHQPDRYYRV 536 Chlorobium phaeobacteroides DSM 266
ACD90261     507 ASLGDhr-----------ygLFPWWKTASEt-PDFHQPDRFLRV 538 Chlorobium limicola DSM 245
EEV22989     213 RVIQQppdngladssaptadEMSYWAIQHAqpADFHNKAHWINI 256 Enhydrobacter aerosaccus SK60
ABE75800     206 CVILSfg------------eITLYFAPKHAspPDFHNSQYWTPF 237 Psychrobacter cryohalolentis K5

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