1ULV


Conserved Protein Domain Family
DOMON_glucodextranase_like

?
cd09626: DOMON_glucodextranase_like 
Click on image for an interactive view with Cn3D
DOMON-like domain of various glycoside hydrolases
This DOMON-like domain is found at the C-terminus of various bacterial proteins that play roles in metabolizing carbohydrates, such as glucodextranase (hydrolyzes alpha-1,6-glucosidic linkages of dextran from the non-reducing end), glucan alpha-1,4-glucosidase, pullulanase (degrades pullulan, a polysaccharide built from maltotriose units), arabinogalactan endo-1,4-beta-galactosidase, and others. Consequently, the DOMON-like domains in this family co-occur with catalytic domains from various glycosyl hydrolase families. The precise function of the DOMON domains in these proteins is not clear, they may be involved in interactions with carbohydrates.
Statistics
?
PSSM-Id: 187684
Aligned: 38 rows
Threshold Bit Score: 155.554
Created: 2-Nov-2007
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family
  • Comment:ligand may be a carbohydrate

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                 #       
1ULV_A        777 IGALSDPAGDdngpGTYRYPTNSAYVP---GAFDLTGVDVYDAgDDYAFVATIAgEVTNPWGGQAIs-hQRVNIYLGkge 852  Arthrobacter ...
YP_003117826  902 VLNVTAPAGNdngpGTYQYPTSSSYAS---GSFDLTGFQVITAgSEVYLRASLA-NLVPTFGSVDGa--QLLDIYVHnpa 975  Catenulispora...
YP_003403019 1039 VAEFDDPAGDdhgpGEYTYPTSDDFRD---GAFDLRSFAVYEAdDAYRFVFEVE-ELYDTFGGEFSp--HYFAVYLRdps 1112 Haloterrigena...
ADJ14554     1046 VVELSDPGGDdygpGGYVYPTDGAFED---GAFDLRSFALYETdAQYRFAFTVE-NLYDTFDGAFSp--HYFLLYLRdps 1119 Halalkalicocc...
ADI13570        9 LLTLQDPAGDavgnGTLAAPTASAFRSt--DPFDLTRITVPDA-DTFGVTLEYA-LIPPADAFPQAiteLYVHDADAaar 84   Truepera radi...
ADJ47639      860 LLDTTDPDGDdngpGTYTYPTAGDFHA---GAFDLQRFQVIDSgTSLVFRAQLR-DLSPTFGSPLGa--QLLTIYGHdpa 933  Amycolatopsis...
AAS82008        2 LFLFQDPLGDah-gLAYLYPQAALYREageGYADLTALAGEVReGELVLKLRLA-RYPNPLGGPLGfslATALVYLDlv- 78   Thermus therm...
ADD29704        3 PLLFSDPVGDdh-gLGYAYPRAPLFAEa--GFADLTGFEALRSgEKLVLRVRLH-RYPNPNNAPHGfslATIGIYIHtg- 77   Meiothermus r...
ADR35721        8 LLLLTDPVGDdh-gAGLDYPRAAVYQQv--GAADLTGFKMKRVeGRWRLGVRLA-RYPDPAGAPLGfslAVVAVYLDte- 82   Oceanithermus...
YP_604765      13 LLSFADPAGDargdGGYVLPTRPAISA---DALDLRSFQAEPRgTGMRFVVGLG-RIENPWNAPSGfsaGVTDIFVGss- 87   Deinococcus g...
Feature 1                                    # #                                                  
1ULV_A        853 ---ggATPGLP--GTNINLe--HAWDSVIVTDGRFDGAGVYapdg-------trtsAVSLLAVPEARQIVTRVPKAalgg 918  Arthrobacter ...
YP_003117826  976 atstsTAAAFP--SRNYTIapsDAWNQRLEIQGFASPVWVApsgq-------qvgtPTAVVASTVADTITIALPAAqfgt 1046 Catenulispora...
YP_003403019 1113 r-dggRTTELGdlEVTAAFe--EPWHYRVAASGFGSSVVDAagt---------slgSPTTVVDFESDTAILSVEKGtlsv 1180 Haloterrigena...
ADJ14554     1120 r-sdgRTTGLDdlGLTAEFe--APWHYRIDASGFGRAVVDSegt---------glgTPDLVVDFESDTVIVSVGKDvlgg 1187 Halalkalicocc...
ADI13570       85 g-epgRAALLP--GSGMRLpegRGWHLAFRFVGERVWAFSPegpaaedafprdvtaALGARVRREGNTLTLTTAAPtp-- 159  Truepera radi...
ADJ47639      934 atatsTAAPFP--SRAYTIapqDAWSRRIEVQGFAEPALVDasga--------slaTPSVQASQATRYITVSVAKAafgt 1003 Amycolatopsis...
AAS82008       79 ---pgGEEALLp-GLRTPPg--QGWEAAFVVTGFGVERKSPegk----------reAVRAWREGEWVVWSPGLPPGe--- 139  Thermus therm...
ADD29704       78 ---pgGQEELP--GAGFKTppgQGWNWAYLLTGWKAEEHRPdgr----------ieNVSVTKNGDWLELASNLSPGd--- 139  Meiothermus r...
ADR35721       83 ---pgGEEALP--GAGLRTpadGGWEEAYLISGWGAERRTPdga----------aaPVRAWREGDWIWVQTDLIRR---- 143  Oceanithermus...
YP_604765      88 ---lgKQRTLD--DLRLKTa-gGGWDYHLRITGFGSTLERApdggga----alplpAPEVHVEGSNLVIDAAVPPGq--- 154  Deinococcus g...
Feature 1                   #                                                                     
1ULV_A        919 ldpatARMSVAMFGNAESGEgignVRPVYDGAYWeagdpawikewrFGGgagvfdgtipsrdtdtddPNALDVLVGe--- 995  Arthrobacter ...
YP_003117826 1047 -pgpgWTFTLGLTGQNGFQAdq-aIPFTATPGDYtfg------vcpVGGtapics------vspgsvPEVMSTITPp--- 1109 Catenulispora...
YP_003403019 1181 -dianAEVVPVVGSEDRGTF----RAVDVEAEGYv-----------FGGareda---------ienaPRIIDHLTPp--- 1232 Haloterrigena...
ADJ14554     1188 ldptdAELAPLVGSEDNGAL----RPVAVDPESFv-----------FGGarega---------vgnaPRVVDLLTPd--- 1240 Halalkalicocc...
ADI13570      160 ---rrFSLYGMTGVYDPFSEtg-wRALRTEPAPWs-----------FSSte--------------qtVNVLDVLTDa--- 207  Truepera radi...
ADJ47639     1004 -pgpgWTFAVVLTGQDGNSSdq-aRPFTPTAGQYtfg------lcaTGGmapict------adpataPKAFDVLTPs--- 1066 Amycolatopsis...
AAS82008      140 -----YGYYGAVGLFDPFAPwy-lRPVSPEGGAWv-----------LGApl--------------gmPPVVDVLALrped 188  Thermus therm...
ADD29704      140 -----YGYYVAVGLYDPFTPwh-fRPVRPGGGAWt-----------LDGpa--------------eaPAAVDVLSQsq-- 186  Meiothermus r...
ADR35721      144 -----PRAYVAAGLYDPFEPwg-fRRALPGGGVWy-----------LDGpa--------------daPRALDVIAPdq-- 190  Oceanithermus...
YP_604765     155 -----YAYWVTSSVYSPLTRdgvlRPVTTPGPTSl----------eAGRad---------------aPVPVDVLLPsgd- 203  Deinococcus g...
Feature 1                                
1ULV_A        996 --gQTQAAVLDWRAgs-pVVVPM 1015 Arthrobacter globiformis
YP_003117826 1110 --gVSQSAELDPTLgp-vVLHGV 1129 Catenulispora acidiphila DSM 44928
YP_003403019 1233 --gVDQSDALAYDAds-lATLPF 1252 Haloterrigena turkmenica DSM 5511
ADJ14554     1241 --gVAQEAALEYDAds-lATIPF 1260 Halalkalicoccus jeotgali B3
ADI13570      208 --yAQQRAAIDQGVlp-eIRAPV 227  Truepera radiovictrix DSM 17093
ADJ47639     1067 --dVDQRAELDPTRgp-vSLRGV 1086 Amycolatopsis mediterranei U32
AAS82008      189 qraAYQEGVLRPLRp---KRFAL 208  Thermus thermophilus HB27
ADD29704      187 -nrAYQSGVLQPVRat-qNRTPW 207  Meiothermus ruber DSM 1279
ADR35721      191 -aqVWSSGVLPPAR----KRFPW 208  Oceanithermus profundus DSM 14977
YP_604765     204 -ptPYTQGTLPPVGqtrdTRILV 225  Deinococcus geothermalis DSM 11300

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap