Conserved Protein Domain Family
DOMON_like_cytochrome

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cd09625: DOMON_like_cytochrome 
DOMON-like domain of an uncharacterized protein family
This family of uncharacterized bacterial proteins contains a DOMON-like domain and an N-terminal B- or C-type cytochrome domain. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
Statistics
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PSSM-Id: 187683
Aligned: 25 rows
Threshold Bit Score: 210.738
Created: 23-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
ACA17113     229 AAVGLDLVDRDtlt----------------------vetVAQAPTLDGVlddaawr------------------------ 262 Methylobacteriu...
ACR02603      11 AAAFAACVAAAat-------------------------pAFAAAPADWAaipvqtvtlfypgqvdygwlrsaehkranak 65  Thauera sp. MZ1T
ABD70563      60 GGARKVALGTAcayc---------------------hdeADAEKDLGTKl------------------------------ 88  Rhodoferax ferr...
ABK16144       8 ALTLVLVVALGviltgrchleaa-----epswvvtakylQKAPTGLDDPawqqv-------------------------- 56  Syntrophobacter...
ABV37967       8 SGLFASLFLLGgcggddgadgadglagpagadgtngtdgVDGADGADGVggs---------------------------- 59  Shewanella sedi...
EAS41366       7 LSALSLMVATAhaenltldgie-------sdinwdtvpmVQKSLFFPGKvtyawlnseehkg------------------ 61  Photobacterium ...
YP_001003844 333 AAAPDAHLYRSa---------------------------GLAHVDLEGGlfdsvrlwraas------------------- 366 Halorhodospira ...
ABM04851       7 VSTVLLVLGLPva------------------------lgLALATQGTGI------------------------------- 31  Psychromonas in...
YP_844578      7 LLLFLAVLICGnafmadlatsa-------aietlaaakvPKGPTSLDDPvwqka-------------------------- 53  Syntrophobacter...
ACG72207      48 SSSVKIAFLSGkpgast-----------------vaarrVASPPTVDGDasdwaglpeseiplvsp-------------- 96  Anaeromyxobacte...
Feature 1                                                                                        
ACA17113     263 ----------------aarpvrVRTQQGANLGGtge-------------stVEIRAVQDgTRIYFAFRWQDPTrs--iaR 311 Methylobacteriu...
ACR02603      66 vregeaclschegeeaelgatlVKGGRHEPVPIagkl----------gavaLQVQAAHDdANLYLRFQWKTQMaragqmH 135 Thauera sp. MZ1T
ABD70563      89 ----------------------VKAGPLEPVPVagks----------gykdLSVQAAYDaKNLYLRYEWKTDQpfpgteH 136 Rhodoferax ferr...
ABK16144      57 ------------------rpveVRLKGRGSFAEee--------------vtVTAMAAYTaESIYFLFKWKDPTes--vvK 102 Syntrophobacter...
ABV37967      60 -------------------tlpLPTLEGHNGDHgti-------------maYDVQAAYNgDTFFWRLSYRGNEgk---rH 104 Shewanella sedi...
EAS41366      62 ---------tshknfetrkcsaCHIDEERGLGDmlvksdvpqlkdkngsvvADMQFAHDdEYLYIRTEWAAQSghpgrmH 132 Photobacterium ...
YP_001003844 367 ----------alldvrldpeqpLASDPGRNVYIpprge---------lertLRVGAVYNdDEIQIRYEFATEAps--wyH 425 Halorhodospira ...
ABM04851      32 ----------------------IKNDLERNIYIptel-----------tmpLQIKSAYNgEQIFFRYRWPAAAph--ilH 76  Psychromonas in...
YP_844578     54 ------------------kpldIPFAGKEKFAGkk--------------anVITQAVYTdDEIFFLFKWKDATns--vtK 99  Syntrophobacter...
ACG72207      97 -----gaimgmteaqwteeytgYFVSRGVCVAGepctrvpr---ydygidrIRVRVAYDdRHVWFLFRWSDPTes--raW 166 Anaeromyxobacte...
Feature 1                                                    # #                                 
ACA17113     312 VPMIKEADGWhvhas--------------rageaDVVDFYEDKFAAIFshsdgf-------------gaggvTHLGPRPL 364 Methylobacteriu...
ACR02603     136 DYMMYDGEKWafiggprs---------keavrsgAQPPLYEDRLSVMIddgkvpmf--------anqgcwltCHTGMRDM 198 Thauera sp. MZ1T
ABD70563     137 QYLRFDGKEWkvwgfpkl---------dkvvqdgKQPGIYEDRMSIIIddgkvagf--------aqqgcwltCHDGQRDM 199 Rhodoferax ferr...
ABK16144     103 QSWKFDGQNW------------------------THMKGDEDRIALLFeisrin------------gfatkgCTVVCHSP 146 Syntrophobacter...
ABV37967     105 QYLRYDGTAWqkeggdrrdaqatidgdvdqgdmgLLSTIYEQRTSIMLsdptraeaag----afgeqgcflsCHDDSRHM 180 Shewanella sedi...
EAS41366     133 NMIEFDGKKWksvgg--------------drmskPEDPLYEDRLSFMIddgsvaqf--------geqgcfmsCHAGERDL 190 Photobacterium ...
YP_001003844 426 QYWIYEVEGRgtggewvq--------ygsggpepDEHGLYEDRISMLLddgdlgld---------ryggfmtAHEGMRGL 488 Halorhodospira ...
ABM04851      77 DVLRYEDGKWltegh--------------gvpgpAANGLHEDRVAMMVddgsvaefsryggyvaigagiagfTHENPKGV 142 Psychromonas in...
YP_844578    100 GAWQFDGEKW------------------------THLKGDEDRISLLFeinrin------------nfatkgCAVTCHGA 143 Syntrophobacter...
ACG72207     167 RPWVWSAGAWa-----------------------QDATLDEDKLFLSFdaanfkph--------davgcaagCHVKENLG 215 Anaeromyxobacte...
Feature 1                                                                        #          #    
ACA17113     365 PDKPss-------------lnQRGLHYTTDGsy---------------------------vDMWQWKSsrgGLLGHVDDQ 404 Methylobacteriu...
ACR02603     199 PGEPtkeqvqahpligqthkeSDVRKYLPATrtdeaaswdktrap---eeiarlkeagafvELMQWRGhrsNPVGMADDG 275 Thauera sp. MZ1T
ABD70563     200 PKQFtkeevaan-pmltaikkGDVRKYLPDSrtdpldwktgktv----eelaklkgegkfvDLIQWRAhrsHAVGMADDG 274 Rhodoferax ferr...
ABK16144     147 PDVP-----------------SKEWKFATETpae-------------------------kgDLWHWKAarsNPYHHADDG 184 Syntrophobacter...
ABV37967     181 PQWTaa--------------nGHDGKYILPGdagae--------------------gdiaaDLWHWRGarsNPIAMADDQ 226 Shewanella sedi...
EAS41366     191 DPATkeqslalpviglhglnkDDIRKYLPESrtdgsswdkpksq----eeidrlkakgqfvDLMQWRStrsGPIGYADDG 266 Photobacterium ...
YP_001003844 489 TGAAeseeveahphlgetlgrSDVRKYIPQSredgdnggadwqdvrdeaeleamrergeflDLWQWRAhrsHPLGYADNG 568 Halorhodospira ...
ABM04851     143 SKHLpetqqd------evaleDVTQHQLRKAgy--------------------------flDLWHWRAgrsNPIAMADDQ 190 Psychromonas in...
YP_844578    144 AGAA-----------------VKDFKFATASage-------------------------kgDLWHWKAarsDPYKSADDG 181 Syntrophobacter...
ACG72207     216 VFTDp----------------VRSQRFSMHTngag-----------------------qlvDGWTWRAartGPLGLADDQ 256 Anaeromyxobacte...
Feature 1                                                                                        
ACA17113     405 ymgppreptp--dearkraryqGGYWNDPGSTIYSYNFPFegpggyagpvkPKRLPVDpaatmaalghfdlknpdthqd- 481 Methylobacteriu...
ACR02603     276 yv-------------------lDYRLVDAGKGPFGWNVDRkt-------mtPKFMFDPakvgvkalaladvgnas----- 324 Thauera sp. MZ1T
ABD70563     275 yv-------------------mEWRLSDAGKDMFGGNADAkt-------hePKFMWDAkkvgyksitadqlrkg------ 322 Rhodoferax ferr...
ABK16144     185 wltladn--------psgsyrtTGRRADGGGGGDVNNETPdk-------trPLYMQDPsripsapgfll----------- 238 Syntrophobacter...
ABV37967     227 wikttdfpgggggnapgdgsdnGGRKGDGGQSVFFNQGLDvd-------gnPQYLLDPtttfgertfawsdfwttpfyym 299 Shewanella sedi...
EAS41366     267 yv-------------------fEYRLNDSGKTVFTWNVDRkt-------miPKYMYDIektgfyainrednndlt----- 315 Photobacterium ...
YP_001003844 569 yv-------------------lEYRHSSEGRGMFTDNWDDea-------dqPRWMYDPdeagfralerdrlldgayd--- 619 Halorhodospira ...
ABM04851     191 nv-------------------gKSRSGDEGKGSYTKNWNGdt-------nqPLQMFNVqttgqralawddvrqgkit--- 241 Psychromonas in...
YP_844578    182 wlta--------------agekTGRKDDAGGGGDARNETAdk-------skPQFMQDPskkpsapgvll----------- 229 Syntrophobacter...
ACG72207     257 fwne--------------triyGDCPDPPACAQACLAGRTpp--------cSVSLTQTns-------------------- 294 Anaeromyxobacte...
Feature 1                                                                                        
ACA17113     482 ------egarwwltgadskpyteeddARIPVGTVIPGVLntg----tyeGDRADLSGGAKWk--------dGYWTLEVSR 543 Methylobacteriu...
ACR02603     325 ---------kphalirednavaydpaAGWKKGDVLPGRLlsradasgsaADNADVRGEWAD----------GQWTVLWTR 385 Thauera sp. MZ1T
ABD70563     323 ----------dhflireqnavpfdptAGWKEGDMIPDYVvsre---dakGSAADNNAIASWk--------dGKWTVVLVR 381 Rhodoferax ferr...
ABK16144     239 ----------------feeavnipddAVFKAGDIIPYRMpkk-----pdGSRSDVKAIGQYa--------dGGWTVMLYR 289 Syntrophobacter...
ABV37967     300 smpdaaqlghttpnplavpyadvsgdFVPVDGDTVPRRIlra-----gaGSRADITAYGTSytpesgdgnlGVWNVQMQR 374 Shewanella sedi...
EAS41366     316 ----------kqialvegvntmpydaSKIKPGQMLQGRLlrm-----pdGSAGDNSGIASEfk-------dGRYTVVFKR 373 Photobacterium ...
YP_001003844 620 --------qddlyylseghatdfdpdHHWEDGDVLPQRFlqe-----pdGSRGAIRAAGGYe--------dGAWRVRLTR 678 Halorhodospira ...
ABM04851     242 --------qedsyylsaqtavpfdpqADWKNGDTLPRRIlrq-----pvGDRGDIAVVAKEtrw-----edGFWNVTLVR 303 Psychromonas in...
YP_844578    230 ----------------aedtveitdhGKFKANDTLTYRMpkk-----psGSRADIKAESRYa--------dGGWTVMLSR 280 Syntrophobacter...
ACG72207     295 -------------------------dGLTPASPKWMGEG----------GLASNPATLFVS----------GGAPLAVPI 329 Anaeromyxobacte...
Feature 1                              ### #            #      
ACA17113     544 ALRTg-SRYDVDFvpg-epLYLWVAVFDHTQtr-hTRHVRPVRVVL 586 Methylobacterium sp. 4-46
ACR02603     386 KLDTghADDDKALkpg-gvVNVGFAVHDDNVt--tRFHHVSFPLTL 428 Thauera sp. MZ1T
ABD70563     382 PLGLt-NADDKSLkag-svYNVGFAIHDDNIt--tRGHQVSFVKTL 423 Rhodoferax ferrireducens T118
ABK16144     290 KLDTg-REDDVAFnpr-keYSFAMAVFDDSG----DDHSKATRAMI 329 Syntrophobacter fumaroxidans MPOB
ABV37967     375 ALDTgsATDDIAMvag-gtYDAGFEVHLWEYt--tRDHYVSFPKKI 417 Shewanella sediminis HAW-EB3
EAS41366     374 KFDTg-SPEDDKImkiggtYNFNVAIHDDSTt--tRSHFVTFPFDV 416 Photobacterium profundum 3TCK
YP_001003844 679 SLEAp-EPTDSHTlepggvYDVAFAVHEGVGq---RWHRVSLPQTL 720 Halorhodospira halophila SL1
ABM04851     304 DMDTgnPLNDKIFrek-grYDLAVSVHRNATg--gRWHYVSMPYTV 346 Psychromonas ingrahamii 37
YP_844578    281 KLDTg-NDDDVAFntk-kkYSFALALFDDSMdy-dSYDSEALVLEF 323 Syntrophobacter fumaroxidans MPOB
ACG72207     330 DTLTl-PAEGTRIpa---vALQPPGLHRDDViaaaRWADGTWTVEL 371 Anaeromyxobacter sp. K

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