Conserved Protein Domain Family
CBM9_like_HisKa

?
cd09622: CBM9_like_HisKa 
DOMON-like type 9 carbohydrate binding module at the N-terminus of bacterial sensor histidine kinases
Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this family are located at the N-terminus of bacterial sensor histidine kinases and may constitute or contribute to the ligand-binding moiety.
Statistics
?
PSSM-Id: 187680
Aligned: 17 rows
Threshold Bit Score: 211.482
Created: 6-Nov-2007
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family
  • Comment:ligand may be a carbohydrate

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_663473     65 MVGTARAVATALHERPALFDTQSa---YLTDVKp----------------------------------------GTDLYA 101 Pseudoalteromon...
YP_003072564   1 MKLRKQLLIVSLITLTLPWVGCR----YIGEMEqtlrdsqsealiamskaiaa-rmgsdstivaeldrlnpprdSSPVFA 75  Teredinibacter ...
YP_003146075   4 LSLTSRLLLLSLLFVLIPLISWLllakFEKDIErnaldqskeqaqilggf-------vnqllqtdrtlkqqflnTTQQKQ 76  Kangiella koree...
ZP_01895333    1 MTLKRQLFIASLLMLLIPWAGLQ----FVLELDqalrdqaarqlhsqagrt------agfaaeqlagtptvaprTRVIYA 70  Marinobacter al...
YP_960942      1 MSLKRQLLLASLLMLLVPWAGLR----FVLELDsalrqqalqql-------------------qaqgarladvaGDRLLD 57  Marinobacter aq...
ZP_01735549    4 LSLKRQLLLVSLLMLLVPLAGVQ----FALELDnilrqqaqqql-------------------qqqanrlallaGDELLA 60  Marinobacter sp...
ADP99212       1 MNLKRQLFVASLLMLLIPWAGLQ----FVLELDdalrqqarqql-------------------qaqaerlaataGDQIIG 57  marine bacteriu...
YP_064488     42 MLFSARAVASTLTGRSGLFAREQ----FLSLNP-----------------------------------------GTDLYL 76  Desulfotalea ps...
EDM67037       5 FNLKTQLLLVASLMLLLPWAGCQ----SVRILEtslrqshsqlldvqmtaaiqqlqhklnqsqhsvfntnqgnyYAPLTD 80  Moritella sp. PE36
YP_526489      1 MRLRKQLFFVSLITLTLPWAGCQ----YVKEMEqtlrtgqsealtatamaaaa-rlssdpaavmqlqqlgtpagLTPLYA 75  Saccharophagus ...
Feature 1                                                                                        
YP_663473    102 HKIhd-------------pIRLDGKLDDWL----------DYQHLSLEYGRAHlldylndsd----dyqpsslhfRHMVG 154 Pseudoalteromon...
YP_003072564  76 HNLpa-------------aPLVDGYQTDWQ----------EQQLASQSLRGPGgal-----------------raQFTAG 115 Teredinibacter ...
YP_003146075  77 FPIalk----------etaLLIDGFSDEWY----------PYQSATTRIRNFGqd-------------------aKLTVI 117 Kangiella koree...
ZP_01895333   71 DLLsr-------------sPNLDGYGDDWP----------GYDEEESRQQWQGtqrttn----------kdgpevSWQAA 117 Marinobacter al...
YP_960942     58 TPVatdqgaiy-agstdqaITIDGYGHEWP----------GFDEGDQPAPWQTagkt---------------splRWQAS 111 Marinobacter aq...
ZP_01735549   61 QPPlaagtfavytaaqnsaLLLDGYADDWP----------GYDSPEPFPPSAQallsalqpwqqlpgaapqpsalYWQAS 130 Marinobacter sp...
ADP99212      58 TPVvrpgepaiyvepfagnLNLDGYADDWP----------GYDEANQTRNWQRvasgka-----------getalQWQAA 116 marine bacteriu...
YP_064488     77 YPLtg-------------pIRINGLQDDWQ----------EQPGSFQLFGKEHlrsatds---------ssafyfRHRSG 124 Desulfotalea ps...
EDM67037      81 SKMl--------------lDGFDGEESDWEnittpwfqlnNYDHEADLSAEAKpat-----------------taKFRLA 129 Moritella sp. PE36
YP_526489     76 HPMat-------------aVVPDGYDDEWVta------glARQGLAAPSGEKA----------------------QIVAG 114 Saccharophagus ...
Feature 1                                       # ##                ###                          
YP_663473    155 QFgeYLYAMFEVTDErvllRAKNSLRVDRNDYLQIAMTg------pDGSFKRYVVAPqEAGWVNAYllsesvdsmrpvsl 228 Pseudoalteromon...
YP_003072564 116 SFagSLYLVLVVHDDtrsyYQPTQPTPLVVDHLLLQLPd------sEGAIKTLLIAAsGQGRVTAGwltgt-----qlep 184 Teredinibacter ...
YP_003146075 118 EDkdFVYGLFEVEDN----SIVYRKRLDLTDLSDKITLv-------LGSYQMQFMPM-APGKVPALrqtad-----gyre 180 Kangiella koree...
ZP_01895333  118 VDqtHLYLLIRVSGRta-dFFNPGNPRHPHDQIQLQVIn-------EKQTTRRLIRTqAPGAINAIdper------egst 183 Marinobacter al...
YP_960942    112 HDdqFLYLLIQRLDQgl-aLYNPARPDQAHERLELWLQaparelgtHNQGQRWFIRAvAPGDVPVYraep------aqar 184 Marinobacter aq...
ZP_01735549  131 HSdkALYLLIRIPGQpp-qLFNPGAPQQAHHRLLLQLFssanelriNPRNQAWLLRPsAPGQLPARsgad------wtkt 203 Marinobacter sp...
ADP99212     117 TDrrNLYLLIRVSHRqp-vFFNPGSPEQAHDRLRLWLEpsggnlaqESGRQSWLLRTpAPGQLYGLeekg-------gqp 188 marine bacteriu...
YP_064488    125 IWqdYLYAFFEVHDAtvvyRPPQSLRLDTSDFLEINTEd------aNGLSRRYLITTsKPGWVNGFlmaesg--ayarri 196 Desulfotalea ps...
EDM67037     130 ANdrLLYIFIQTSALtp-hYYNPMQPQRAADQLNIRTIn------nTGLVSHWQINPqGSGRVEIKntsq-------amt 195 Moritella sp. PE36
YP_526489    115 SYqrSLYLFLRSYNNpkqyYSPSQRSPIESDHLRIKLRn------eLGQEQTLLVYTsVPGRASVDrlien----nrtva 184 Saccharophagus ...
Feature 1                                        # #                                             
YP_663473    229 ETQIQGRWLNTaKGYNVELRFPLAMmsSKIAFAITDVDDPqtreiryriGTANPNKSDTLGTVLvPSPEIENILKGLKYS 308 Pseudoalteromon...
YP_003072564 185 EYQLTGVLSETaTGYILELKMPLSWaaNGLGLRLVDQSKA---------DDASNFTSGIPPLVT-ESALLTRELGIFARE 254 Teredinibacter ...
YP_003146075 181 VTPIYAVWQERtEGYQLEFRVPQSLvgKTISAEITDIDRA---------QSGVALQGIYSFTDF-ESLSLHSRLQSGVLS 250 Kangiella koree...
ZP_01895333  184 DYRISGYWQAVsNGYQAELRLPRPApsSRLGFQVTWPAERpa-----nsGDERVSAGPTSAQIVtRMPQLENRLAAMIAP 258 Marinobacter al...
YP_960942    185 DHRLQASWQDKgASWELELKLPLPSpgSRLGFQATREGQP---------NNNTGTTLAPPPLLVqQDNRLEHLLKSQISP 255 Marinobacter aq...
ZP_01735549  204 DPDVNAFWQPVaNGWQLELALPRPAvgSRIALALYGGEGVa--------AESPPLAQIPAATLVrRNADLEQALASWLDS 275 Marinobacter sp...
ADP99212     189 DYRLSGFLQGAgDGWQLELKLPMPVdrSRLGFAALWSSDQ---------VTGVSTSVDPLPVLVsRNLALERQLEPQLNP 259 marine bacteriu...
YP_064488    197 ERRIQGMWRQTaDGYAIEIRMPMSLvgRKLAFSVGNVNSSlqprleeiiGTAGREERNSLGRAIaPSVEIQKILQELDRP 276 Desulfotalea ps...
EDM67037     196 SGRDAGTWLWRdGHYNIEIAIPIDLasNAIGFDLILNGNQin------qHLKSKPTMTYERSLVrEKLGLNHQLANYSQP 269 Moritella sp. PE36
YP_526489    185 EHKVICHWLEWqDGYHIELELPLTWakGGIEVYLTQALASdaskqallsNRQNNQTALIAPLIT-PSEILANELAIFSRT 263 Saccharophagus ...
Feature 1                #                 
YP_663473    309 -----NARVWVIDKHKRVLARSGNIH 329 Pseudoalteromonas atlantica T6c
YP_003072564 255 -----GVRLQIATRGTRPVAREGGIT 275 Teredinibacter turnerae T7902
YP_003146075 251 llepeLYRLTLTNNQGEVLYQFGQLH 276 Kangiella koreensis DSM 16069
ZP_01895333  259 -----GQGTWVLEPDGWVIARQTRDS 279 Marinobacter algicola DG893
YP_960942    256 -----GQQATVLEPGSWILAHSRVAA 276 Marinobacter aquaeolei VT8
ZP_01735549  276 -----GQQLRVMEESGWVIARQQRTV 296 Marinobacter sp. ELB17
ADP99212     260 -----GQQARLVEPAGWVIARQQADS 280 marine bacterium HP15
YP_064488    277 -----HSRVLIVDSNRKVRATFGHLL 297 Desulfotalea psychrophila LSv54
EDM67037     270 -----GLSLYLLNSQYWLVGQQNADQ 290 Moritella sp. PE36
YP_526489    264 -----GVQLHVASSGVKRLASTGNLN 284 Saccharophagus degradans 2-40

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap