Conserved Protein Domain Family
CBM9_like_4

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cd09619: CBM9_like_4 
DOMON-like type 9 carbohydrate binding module
Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
Statistics
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PSSM-Id: 187677
Aligned: 17 rows
Threshold Bit Score: 129.094
Created: 22-Dec-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family
  • Comment:ligand may be a carbohydrate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
YP_680303     508 APTIDGVADGVWGgtntsaslnn-----------------vidgtvanaSDLSANYKAMWDATYFYVLVNVTDNvktnn- 569  Cytophaga hut...
YP_002940410  458 PPTIDGVMEDNWKnymiavlndets-------------vgyleslwdgpEDLSAKVYSMWDEEKLYLFFDITDDrlrqtq 524  Thermotogales...
YP_002352292   41 PPTIDGDIKISEYflspryyvglkg------------dvdyipenwngpNDLSVYYYMLWDKTYLYIGAVLKDDsivqla 108  Dictyoglomus ...
YP_003397225  577 QPALDGTFSAAKYpgqpidlsktw---------------egsidsrstrTKARGTAYASWFGDSLYMHVRVTDDtlgtil 641  Conexibacter ...
YP_001105537  568 PPAVDGRAGAEEYpgpalelsar-----------------wegdecasrDDCSATAKLARHGDVLHVLVDVVDDvrgral 630  Saccharopolys...
YP_003153940  583 APVIDGNRHEDEYpgepipvetiw---------------dgigtpggttDSVRADSWVTFDDENLYVFVSVADDvrgtil 647  Brachybacteri...
YP_003383848  578 APVVDGKADAGEYpgptldlgriwqga---------stctgvddcgvsaTGEGSTAKVSWSGDALYFFVHVRDDyqsyav 648  Kribbella fla...
ACD82604       38 KVIIDGNLEEWNYsgailsc----------------------ydlstlkDTHSVQSMAMYDENYLYLAFRFKDKtplenq 95   Methylokorus ...
EEG18348      410 PAAIDGNLSSAKWspndfitlaqrg------------hwrlrdtthparEDSFVRAALRWDAQNLYIAWLVQDDdlslld 477  Opitutaceae b...
ZP_01875012  1055 QKAADLTMKMAKEkdepsiykikkhtpdayfanlnadfkgqeqikfkktTHTHVRVVASYDDKNLYVGWQVKDKtpwing 1134 Lentisphaera ...
Feature 1                         #                   # #                                         
YP_680303     570 -----ggtdyYNDDAVEVFFDIGNNkt---ttYGANDFQYTFRWNDnt----------------iYEKNNKt-------- 617  Cytophaga hut...
YP_002940410  525 -----qgvnmWKGDHVELWFDTSFLdvk-akpANNDDFQIGLSTGDfds--------------lpPEAWIWvpfsd---- 580  Thermotogales...
YP_002352292  109 -----tgenmWQGDHIEIWFDTDLQsdfednkNNKDDYQLGISPGDfel--------------lsPEIWVWtppvla--- 166  Dictyoglomus ...
YP_003397225  642 a--pedakrhWRADSVEIAFDPQPEs-----fDTSTTFKVGVFPTTtn---------------gqPAAYRDadgfqgp-- 697  Conexibacter ...
YP_001105537  631 a--ardckrhWRTDAVEIAIDPKGGs-----eNTSSTFKLAVLPRTeagppch------frdadnHQGPGAet------- 690  Saccharopolys...
YP_003153940  648 p--vddnkrqRRTDSIEIYVDPRGKa-----aNTAETFIAGIMPSMgsmtgppgvgrdrdnhqgvAEETAPg-------- 712  Brachybacteri...
YP_003383848  649 k--paecvghWQADSVEILLDPRGTasq-almDTANTFKLGIFPFSddpargngp--cwsrdadnHQGYSSgsldt---- 719  Kribbella fla...
ACD82604       96 vdpvfdpqggWKGDAVQVRLKTPSQil----hFTTWYYTPKSLPWIsi----------------hVGLWNPstppyediq 155  Methylokorus ...
EEG18348      478 ----lvsrdwRDADNVRLFLSAESEpsk--rsRNISPRDLLVLMTPtrqf-----------hdeaPAVLVAslggyv--- 537  Opitutaceae b...
ZP_01875012  1135 a--eeaqymyGRGDTVDLQIQAADY-------KGKKAYQRLSIGNLkgkdmavly--reksaekkPMSFSSgvitdfpv- 1202 Lentisphaera ...
Feature 1                                                                     #                   
YP_680303     618 ------tGVTFARVDn------------sTGYVMEMRFPWSTLTGSPai---nQLVGFDVAVNDDDdgnardrk------ 670  Cytophaga hut...
YP_002940410  581 ---eafkEICVAATKt------------eQGYTLEASIPWSILGMEVks---gLVFAGGFMVSDTDtdgpsqeti----- 637  Thermotogales...
YP_002352292  167 -devkkaKIAVKRTN--------------DGYTVEVAIPWSLIKVKPep---dLIMGFAFSPSDTDtpgkldqem----m 224  Dictyoglomus ...
YP_003397225  698 -iaqsapGMRVVSRInta---------nyTGYELEVKIPFSDLPAAAr----qNWTGMNIFIYDSDtqdkv--------- 754  Conexibacter ...
YP_001105537  691 -----apGVRIASVEr------------dGGYTVEAAIPLSALPGSAd----pARMGLDLLVYDSDtddltgqtrigwsa 749  Saccharopolys...
YP_003153940  713 ------mEVAVSMAEsed---------nyTGYDVEAKIPFEVLPDAId----pSHMGFNVLINDSDtqnqaaqvrvgwst 773  Brachybacteri...
YP_003383848  720 ---gnapGVQVASTArwvgsnettvphgyTGYDLEVKIPLATLPAAVd----pANLGLNLTPYDNDdtsapgttt----l 788  Kribbella fla...
ACD82604      156 dgkklgvKIAFKKDPs------------gEAYTEEVAIPWSFLQKQKpylhekLRCGLEFFWGRKNgkdwpehrfad-li 222  Methylokorus ...
EEG18348      538 -rtgyesKIKIASRIw------------hGGYLIEVAIPFDAIGITPta---nQLLGINLMSDDCDrgfrksvs------ 595  Opitutaceae b...
ZP_01875012  1203 dyvavepSVKVQSTIr------------gENYWVQASIPWSVLGIKPkag-dkLAVDFGVTYGDAKgtdt---------- 1259 Lentisphaera ...
Feature 1                           
YP_680303     671 iswaatadQAWTNPSYMG 688  Cytophaga hutchinsonii ATCC 33406
YP_002940410  638 istsqklpANWGMTNLFN 655  Thermotogales bacterium TBF 19.5.1
YP_002352292  225 mssapgasPNWGNPTFWG 242  Dictyoglomus turgidum DSM 6724
YP_003397225  755 ----gqtrQGWSTFNGVQ 768  Conexibacter woesei DSM 14684
YP_001105537  750 wggvqgdpYRWGRVVLEG 767  Saccharopolyspora erythraea NRRL 2338
YP_003153940  774 fagvradpWRWGQVSLEG 791  Brachybacterium faecium DSM 4810
YP_003383848  789 rhidqstrLGWSALGSVQ 806  Kribbella flavida DSM 17836
ACD82604      223 npgnpkreFFWDNPEAWG 240  Methylokorus infernorum V4
EEG18348      596 -llalknyDYWNSPTSLT 612  Opitutaceae bacterium TAV2
ZP_01875012  1260 -----vlrNYWSNKSTGL 1272 Lentisphaera araneosa HTCC2155

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