Conserved Protein Domain Family
SAM_LBP1

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cd09588: SAM_LBP1 
SAM domain of LBP1 (UBP1) transcription factors
SAM (sterile alpha motif) domain of LBP1 (also known as UBP1) transcription factor is a putative protein-protein interaction domain. Proteins of this group have an N-terminal DNA-binding CP2 domain, a central predicted SAM domain and some also have a C-terminal dimerization domain. They are involved in transcriptional regulation from early development to terminal differentiation. In particular, they regulate alpha-globin in erythroid cells and P450scc (the cholesterol side-chain cleavage enzyme, cytochrome) in human placenta. Human LBP1 is known to be induced by HIV type I infection in lymphocytes; it represses HIV transcription by preventing the binding of TFIID to the virus promoter. Additionally, it has been suggested that UBP1 (LPB1) regulator might be a member of a blood pressure controlling network. LBP1 protein isoforms are able to form dimers, apparently via SAM domain since SAM deletion or mutation resulted in a loss of this ability.
Statistics
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PSSM-Id: 188987
Aligned: 3 rows
Threshold Bit Score: 138.969
Created: 29-Sep-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9NZI7    369 TIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVC 435 human
XP_426018 369 TIQETQQWLLKHRFSTYTRLFSNFSGADLLKLTREDLVQICGPADGIRLYNALKSRSVRPRLTIYVC 435 chicken
CAM56372  372 SIQDTQKWLLKNRFNSYSRVFAHFSGSDLLKLTREDLVQICGAADGIRLYNALKSRAVRPRLTLYVS 438 zebrafish
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