Conserved Protein Domain Family
SAM_Scm-like-4MBT1,2

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cd09581: SAM_Scm-like-4MBT1,2 
SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
SAM (sterile alpha motif) domain of Scm-like-4MBT1,2 (Sex comb on midleg, Malignant Brain Tumor) subfamily proteins (also known as Sfmbt1,2 proteins) is a putative protein-protein interaction domain. Proteins of this subfamily are transcriptional regulators belonging to Polycomb group. The majority of them are multidomain proteins: in addition to the C-terminal SAM domain, they contain four MBT repeats and DUF5388 domain. The MBT repeats of the human sfmbt1 protein are responsible for association with the nuclear matrix and for selective binding of H3 histone N-terminal tails, while the exact function of the SAM domain is unclear.
Statistics
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PSSM-Id: 188980
Aligned: 9 rows
Threshold Bit Score: 151.445
Created: 8-Mar-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative oligomer interface ML [polypeptide binding site]
Evidence:
  • Comment:The mid-loop (ML) surface of the SAM domain of Ph protein interacts with the end-helix (EH) surface of the SAM domain of Scm protein forming heterodimers.
  • Comment:SAM domains of Scm and Ph proteins can form head-to-tail homooligomers via interactions between the mid-loop (ML) and end-helix (EH) surfaces.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 ### ##  ##  ##    #                     
Q9UHJ3        782 EVAERLHLDSNPLKWSVADVVRFIRSTD-CAPLARIFLDqEIDGQALLLLTLPTVQECMDLKLGPAIKLCHHIERIKFAF 860  human
Q5VUG0        810 EEEERLVLESNPLEWTVTDVVRFIKLTD-CAPLAKIFQEqDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAF 888  human
XP_414254     783 EVAEKLQLDSNPLEWSVADVVRFLKSTD-CAPLARIFLDqEIDGQALLLLTLPTVQECMDLKLGPAIKLCHHIERVKLAF 861  chicken
CAI11875      776 EEEDRLVLDTNPLQWSVSDVVDFITSTD-CASLAKIFQEqDIDGQALLLLTLPTVQECMDLKLGPAIKLCHQIERVKVAF 854  zebrafish
XP_001201293 1349 PEKQSLKLESNPLHWSVDRVVKFIKKTD-CASLAKVFKDqEIDGQALLLLTLPTVQECMELKLGPAIKLCHHIERVKIAF 1427 purple urchin
XP_002578577 1151 CNIPRVILPSNPMFWTPVDLASYLGSTD-CREMWPWLAAeAVDGQAFMLLTLPVLHRLVGLRWNDAVRLARHVMSVKQAF 1229 Schistosoma m...
XP_001120398  765 RRPKTRKLDSNPLFWSVDDVFRYLRKTNdCKDIAYRVKQeEIDGLAFLLLNLPSLTQHMKLRTSLAMKLCRHVEQVKVTF 844  honey bee
XP_002613598  758 QEEEKLRLDSNPLYWSVIEVVKFIKDTD-CAPLAKVFLE-QANGQALLLLTLPTVQECMELKLGPAIKLCHHIERVKIAF 835  Florida lancelet
XP_002931917  725 KEEEHLVLESNPLQWTVTDVVRFIKSTD-CAPLAKIFQDqDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAF 803  western clawe...
Feature 1               
Q9UHJ3        861 YEQFAN 866  human
Q5VUG0        889 YAQYAN 894  human
XP_414254     862 YQQFAN 867  chicken
CAI11875      855 YSQYAN 860  zebrafish
XP_001201293 1428 YEQYAS 1433 purple urchin
XP_002578577 1230 LEQFSM 1235 Schistosoma mansoni
XP_001120398  845 FLRHIN 850  honey bee
XP_002613598  836 YEQFAK 841  Florida lancelet
XP_002931917  804 YAQYAN 809  western clawed frog

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