Conserved Protein Domain Family
SAM_liprin-beta1,2_repeat1

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cd09563: SAM_liprin-beta1,2_repeat1 
SAM domain of liprin-beta1,2 proteins repeat 1
SAM (sterile alpha motif) domain repeat 1 of liprin-beta1,2 proteins is a protein-protein interaction domain. Liprin-beta protein contain three copies (repeats) of SAM domain. They may form heterodimers with liprins-alpha through their SAM domains. It was suggested based on bioinformatic approaches that the second SAM domain of liprin-beta is potentially able to form polymers. Liprins were originally identified as LAR (leukocyte common antigen-related) transmembrane protein-tyrosine phosphatase-interacting proteins. They participate in mammary gland development, in axon guidance, and in the maintenance of lymphatic vessel integrity.
Statistics
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PSSM-Id: 188962
Aligned: 25 rows
Threshold Bit Score: 93.0611
Created: 11-Mar-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O35711        561 FAQWSTERVCTWMEDFGLGQYVIFARQWV----TSGHTLLTATPQDMEKELGIKH-PLHRKKLVLAVKA 624  house mouse
AAF49801      357 WTTWGAQEVCNWLAYMGLGCYEDNCRKWLn--aNPSVSFFTASPVDIERELNLKM-PLHRKKILLAIDD 422  fruit fly
XP_311601     261 FREWDVDTICHWFEHLGLNMYEEDLRKWIksstTPGSELMKASPVDIEKELSLRN-PLHRKKIVLAIAD 328  Anopheles gambiae str. PEST
XP_002423828  720 FADWDVDNLCGWLEELSLENYVGDLRRWI----KNGGQLLAATPNEIEKELGLKNhQMHKKKLLLALQE 784  human body louse
XP_001862916  110 FREWNLDTLCLWFEQMGLGMYEEELRKWLk--vGGAAELAAASPVDIEKELSLRH-ALHRKKIVLAVAD 175  southern house mosquito
XP_002412422  260 VSQWKADTISSWMESMGLAVYNDTSRSYL----CDGTKLLKVTASELEKDLGMKN-PLHRKKMLLAVES 323  black-legged tick
XP_001897725  604 FVDWSKEQICEWMAEIGFSVYVPEVERFI----RSGRHLLNMTNQEYEKELLMRN-PLHRKRFRCILTS 667  agent of lymphatic filar...
XP_001952054  216 FSELNRQQLRDWFAEQGIDYVLEGSKLWP----TSGKELISSSISEIDEKFKFKH-WLHRKKLILAIQF 279  pea aphid
XP_395100     275 LVELSMEEIEDWLANLGLECYAGELRRWG----ATGSKLLDCSQQQLEKELEIKN-VLHRKKLLYAIES 338  honey bee
Q94071        611 FVDWRSEQLADWIAEIGYPQYMNEVSRHV----RSGRHFLNMSMNEYEGVLNIKN-PVHRKRVAILLRR 674  nematode
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