1X64


Conserved Protein Domain Family
LIM_ALP

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cd09450: LIM_ALP 
Click on image for an interactive view with Cn3D
This family represents the LIM domain of ALP, actinin-associated LIM protein.
This family represents the LIM domain of ALP, actinin-associated LIM protein. ALP contains an N-terminal PDZ domain, a C-terminal LIM domain and an ALP-subfamily-specific 34-amino-acid motif termed ALP-like motif (AM), which contains a putative consensus protein kinase C (PKC) phosphorylation site and two alpha-helices. ALP proteins are found in heart and in skeletal muscle. ALP may act as a signaling molecule which is regulated by PKC-dependent signaling. ALP plays an essential role in the development of RV (right ventricle) chamber. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188834
Aligned: 4 rows
Threshold Bit Score: 107.683
Created: 28-Jul-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1X64_A; Mouse Alpha-Actinin-2 associated LIM protein LIM domain binds Zn
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  #  
1X64_A        28 CDKCGSGIVGaVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHAR 80  house mouse
Q6GLJ6       290 CDRCGNGIVGtVVKAKDKLRHPDCFVCSDCNLNLKQKGYFFVEGQLYCEAHAR 342 African clawed frog
Q9PU47       245 CDKCGSGILGtVVKARDKYRHPECFVCSDCNLNLKQKGYFFVEGQLYCEAHAR 297 chicken
NP_001036183 245 CDKCGTGIVGtVVKARDKYRHPACFVCSDCGMNLKQKGYFFVDGQMYCEAHAR 297 zebrafish

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