Conserved Protein Domain Family
LIM2_SF3

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cd09441: LIM2_SF3 
The second Lim domain of pollen specific protein SF3
The second Lim domain of pollen specific protein SF3: SF3 is a Lim protein that is found exclusively in mature plant pollen grains. It contains two LIM domains. The exact function of SF3 is unknown. It may be a transcription factor required for the expression of late pollen genes. It is possible that SF3 protein is involved in controlling pollen-specific processes such as male gamete maturation, pollen tube formation, or even fertilization. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188825
Aligned: 16 rows
Threshold Bit Score: 117.571
Created: 1-Oct-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                 #  #  #  #                 #  #         
XP_002298780  109 CVGCNKTVYPIEKVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKG 169  black cottonwood
ABK23670      110 CVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKG 170  Sitka spruce
AAD32870      143 CVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKG 203  thale cress
NP_001057248  112 CVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLFMVKG 172  Japanese rice
ACU15531      111 CVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKG 171  soybean
AAX95760      113 KTVYPLEKTRAEQVAVDGTSYHRPCFKCSHGGCVISPSNYVAHEHRLYCRHHHTQLFKERG 173  tomato
ABK22236      110 CLACGNTVYPIEKVSVEGVGYHKQCFKCIHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKG 170  Sitka spruce
AAK49580       57 CATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKG 117  thale cress
CAN68046       63 CSLCKKTVYPLEKVTVEGEFYHKSCFRCSHGGCFLTPSSYAALDGILYCKPHFTQLFRERG 123  wine grape
NP_001183827   38 CAACQKTVYPLEKMTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFSQLFKEKG 98   maize

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