Conserved Protein Domain Family
LIM3_LPP

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cd09437: LIM3_LPP 
The third LIM domain of lipoma preferred partner (LPP)
The third LIM domain of lipoma preferred partner (LPP): LPP is a member of the zyxin LIM protein family and contains three LIM zinc-binding domains at the C-terminal and proline-rich region at the N-terminal. LPP initially identified as the most frequent translocation partner of HMGA2 (High Mobility Group A2) in a subgroup of benign tumors of adipose tissue (lipomas). It was also shown to be rearranged in a number of other soft tissues, as well as in a case of acute monoblastic leukemia. In addition to its involvement in tumors, LPP was inedited as a smooth muscle restricted LIM protein that plays an important role in SMC migration. LPP is localized at sites of cell adhesion, cell-cell contacts and transiently in the nucleus. In nucleus, it acts as a coactivator for the ETS domain transcription factor PEA3. In addition to PEA3, it interacts with alpha-actinin,vasodilator stimulated phosphoprotein (VASP), Palladin, and Scrib. The LIM domains are the main focal adhesion targeting elements and that the proline- rich region, which harbors binding sites for alpha-actinin and vasodilator- stimulated phosphoprotein (VASP), has a weak targeting capacity. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188821
Aligned: 12 rows
Threshold Bit Score: 130.279
Created: 3-Aug-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                       #  #  #  #                      #  #      
XP_001652822 514 CCVCNNPIMPEPGQDETIRVVALDRSFHINCYKCEDCGLLLSSEAe-GRGCYPLDDHIYCKSCNAKRVQ 581 yellow fever mosquito
XP_002730765 524 CSVCHQPIMPEPGQEETVRIVAMDRSFHVSCYKCEDCGLLLSSEAd-GRGCFPLDDHILCRDCNARRIQ 591 Saccoglossus kowalevskii
NP_652015    508 CCVCKQPIMPDPGQEETIRVVALDRSFHLECYKCEDCGLLLSSEAe-GRGCYPLDDHVLCKSCNAKRVQ 575 fruit fly
XP_798292    378 CSVCLHPIMPDDGQEETVRIVALDRSFHVHCYKCEDCGVLLSSEAd-GRGCYPLDDHILCRECNGKRVQ 445 purple urchin
XP_310193    422 CCVCKMPIMPGPGEDETVRVVALDRSFHINCYKCEDCGLVLSSEAe-GRGCYPLDDHILCKSCNAKRVQ 489 Anopheles gambiae str. PEST
XP_001844057 515 CCVCQKPIMPEPGQDETIRVVALDRSFHVSCYKCEDCGQLLSSEAegGIGCYPLDDHILCKSCNAKRVQ 583 southern house mosquito
XP_967989    408 CWVCKQPIMPEPGEEETVRVVALDHSFHIQCYKCEDCGLVLSSEAe-GRGCYPLDDHVLCKSCNAKRVQ 475 red flour beetle
XP_002427716 360 CCVCKLPIMPEQGEQETVRVVALDRSFHVSCYKCEDCGLVLSSEAq-GRGCYPLDDHVLCKSCNAKRIQ 427 human body louse
XP_002601179 161 CSVCHEPIMPEPGQEETIRIVAMDRSFHVGCYKCEDCGMVLSSEAd-GRGCYPLDDHILCRDCNAKRIQ 228 Florida lancelet
XP_001952562 317 CSVCQFPIMPEVGQDETVRFVALDRSFHVQCYRCEDCDTLLGSEAe-GRGCYPLDDHVLCKSCNAKRVQ 384 pea aphid
XP_001949779 324 CSACKLPIKPEVGQDETIRFVALDRSFHVKCYRCEDCDTLLGSEAe-GRGCYPLDDHVLCKSCNAKRVQ 391 pea aphid
XP_001599375 467 CCVCKLPIMPEPGEDETVRVVALDRSFHTQCYKCEDCGLVLSSDT--EDACYPLDDHVLCKSCNASRVQ 533 jewel wasp

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