Conserved Protein Domain Family
LIM5_LIMPETin

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cd09430: LIM5_LIMPETin 
The fifth LIM domain of protein LIMPETin
The fifth LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188814
Aligned: 7 rows
Threshold Bit Score: 87.9164
Created: 21-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  # 
XP_002410816 217 CIKCNQIISsGGVTYRNEPWHRECFTCTNCSSSLAGQRFTSRDEKPYCAECF 268 black-legged tick
NP_648933    126 CIKCNKVITsGGVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECF 177 fruit fly
ACA13258     441 CTKCSEVIRrGGVTYKGNPWHKECFTCTSCSKQLAGLKFTSKDEQPYCADCY 492 Schistosoma mansoni
NP_001025228 496 CSKCKKVITaGGVTYKNEPWHRECFCCTNCNSSLAGQRFTSKDEKPYCANCY 547 nematode
XP_002731816 363 CNNCTKIINaGGVTYRGEPFHKECFVCNDCKKPLAGMRFTSREDKPYCADCF 414 Saccoglossus kowalevskii
CAX73099     170 CSKCNKAIQkGGVTYKGQPWHKTCFLCTNCSCELAGQKFTSRDEKPYCADCY 221 Schistosoma japonicum
EFN60512     120 CVKCNKIINsGGVTYKNEPWHRDCFTCSNCNNSLAGQRFTSRDDKPYCAECF 171 Camponotus floridanus

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