Conserved Protein Domain Family
LIM2_LIMPETin_like

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cd09417: LIM2_LIMPETin_like 
The second LIM domain of protein LIMPETin and related proteins
The second LIM domain of protein LIMPETin: LIMPETin contains 6 LIM domains at the C-terminal and an N-terminal PET domain. Four of the six LIM domains are highly homologous to the four and half LIM domain protein family and two of them show sequence similarity to the LIM domains of the testin family. Thus, LIMPETin may be the recombinant product of genes coding testin and FHL proteins. In Schistosoma mansoni, where LIMPETin was first identified, LIMPETin is down regulated in sexually mature adult Schistosoma females compared to sexually immature adult females and adult male. Its differential expression indicates that it is a transcription regulator. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188801
Aligned: 8 rows
Threshold Bit Score: 104.92
Created: 22-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                 #  #  #  #                 #  #  
NP_730212    255 PRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLtgqrYVIRDDHPYCIKCYE 310 fruit fly
XP_002410816  33 GYQPQNDELIFSGEYTKAMNKDWHSGHFCCWQCDESLtgqrYVLRDEHPYCVRCYE 88  black-legged tick
XP_976021    236 PRCEGCDELIFSGEYTKAMNKDWHGQHFCCWQCDESLtgqrYVLRDEHPYCVSCYE 291 red flour beetle
XP_001850839 183 DDESQVLPLIFSGEYTKAMSKDWHSGHFCCWQCDESLtgqrYVLRDEHPYCIKCYE 238 southern house mosquito
XP_003138037  20 DHSVTCTLLIFAGEYTKAMNKDWHSDHFCCWQCDNTLtgqrYILRDEHPYCIKCYE 75  Loa loa
EFN60513      41 VDSTQNHHAIEDGEYTKAMNKDWHSGHFCCWQCDESLtgqrYVLRDEHPYCIKCYE 96  Camponotus floridanus
AAF49396      36 EVEVDATIEERGGEYTKAMDKDWHSGHFCCWQCDESLtgqrYVIRDDHPYCIKCYE 91  Drosophila simulans
EAT46934      48 TTQNQNAIEDKGGEYTKAMSKDWHSGHFCCWQCDESLtgqrYVLRDEHPYCIKCYE 103 yellow fever mosquito

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