Conserved Protein Domain Family
LIM1_Prickle

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cd09415: LIM1_Prickle 
The first LIM domain of Prickle
The first LIM domain of Prickle: Prickle contains three C-terminal LIM domains and a N-terminal PET domain. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). PCP establishment requires the conserved Frizzled/Dishevelled PCP pathway. Prickle interacts with Dishevelled, thereby modulating Frizzled/Dishevelled activity and PCP signaling. Four forms of prickles have been identified: prickle 1-4. The best characterized is prickle 1 and prickle 2 which are differentially expressed. While prickle 1 is expressed in fetal heart and hematological malignancies, prickle 2 is found in fetal brain, adult cartilage, pancreatic islet, and some types of timorous cells. Mutations in prickle 1 have been linked to progressive myoclonus epilepsy. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188799
Aligned: 27 rows
Threshold Bit Score: 109.654
Created: 3-Aug-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                       #  #  #  #                 #  #  
Q90Z06        126 CEKCGEKINGGe-vAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHA 184  African clawed frog
XP_002601764  289 CEDCGETVPGEe-tAVFASRAGQGVSWHPQCFVCCVCRELLVDLIYFYKDGMVYCGRHHA 347  Florida lancelet
XP_781488     244 CNQCGGGISAGd-iAVFASRAGHNASWHPGCFACSVCQELLVDLIYFYREGKVYCGRHHA 302  purple urchin
XP_001641861  172 CKECGECVTAGs-mAVYASRAGQHTCWHASCFICTTCKELLVDLIYFYKDSKVYCGRHHA 230  starlet sea anemone
CAG12098      124 HTRCENVGINGgemAIFASRAGPSPCWHPACFACSTCQELLVDLIYFYQNGKILCGRHHA 183  spotted green pufferfish
ADB22627      201 CYHCGSYMDGGs-vAVFASRAGHNVCWHPACFVCCACDELLVDLIYFWKDGKVHCGRHHA 259  Saccoglossus kowalevskii
XP_002159631  187 ISGCSCPILPGe-vAVHAWRAGQEACWHPACFVCSTCVELLVDLVYFYQEGRVYCGRHHA 245  green hydra
CAG08656      124 CDHCGENISGGe-mAVFASRAGPGLCWHPACFACSTCSELLVDLIYFYHEGKVHCGRHHA 182  spotted green pufferfish
NP_899185     132 CEHCGERLSGGemaVCVSRAAAAGQCWHPACFTCSTCSELLVDLIYFYHDGKVHCGRHHA 191  zebrafish
NP_001027600  167 CSECGILVKGGd-iVAVASRAEPGMCWHPACFVCSVCRELLVDLFYFYQDGRLYCGRHHA 225  Ciona intestinalis

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