Conserved Protein Domain Family
LIM1_Paxillin

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cd09405: LIM1_Paxillin 
The first LIM domain of paxillin
The first LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight cons erved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188789
Aligned: 5 rows
Threshold Bit Score: 122.039
Created: 2-Aug-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                #  #  #  #                 #  #  
NP_001081420 314 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQDEIGsrNFFERDGQPYCEKDYH 367 African clawed frog
P49023       357 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGsrNFFERDGQPYCEKDYH 410 human
NP_963882    299 VCGACKKPIAGQVVTAMGRTWHPEHFVCTQCQEEIGsrNFFERDGQPYCEKDYH 352 zebrafish
P49024       325 VCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGsrNFFERDGQPYCEKDYH 378 chicken
XP_001085795 425 VCGACKKPIAGQVMRGSGQGWHPEHFVCTHCQEEIGsrNFFERDGQPYCEKDYH 478 rhesus monkey

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