2CU8,1IML


Conserved Protein Domain Family
LIM_TLP_like

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cd09401: LIM_TLP_like 
Click on image for an interactive view with Cn3D
The LIM domains of thymus LIM protein (TLP)
The LIM domain of thymus LIM protein (TLP) like proteins: This family includes the LIM domains of TLP and CRIP (Cysteine-Rich Intestinal Protein). TLP is the distant member of the CRP family of proteins. TLP has two isomers (TLP-A and TLP-B) and sharing approximately 30% with each of the three other CRPs. Like CRP1, CRP2 and CRP3/MLP, TLP has two LIM domains, connected by a flexible linker region. Unlike the CRPs, TLP lacks the nuclear targeting signal (K/R-K/R-Y-G-P-K) and is localized solely in the cytoplasm. TLP is specifically expressed in the thymus in a subset of cortical epithelial cells. TLP has a role in development of normal thymus and in controlling the development and differentiation of thymic epithelial cells. CRIP is a short LIM protein with only one LIM domain. CRIP gene is developmentally regulated and can be induced by glucocorticoid hormones during the first three postnatal weeks. The domain shows close sequence homology to LIM domain of thymus LIM protein. However, unlike the TLP proteins which have two LIM domains, the members of this family have only one LIM domain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188785
Aligned: 20 rows
Threshold Bit Score: 61.5876
Created: 30-Aug-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2CU8_A: Human TLP protein LIM1 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #    #                  #   # 
2CU8_A        12 CPKCDKTVYFAEKVs-SLGKDWHKFCLKCE--RCSKTLTpg-gHAEHDgKPFCHkpCY 65   human
Q6Q6R5       124 CPGCGEPVYFAEKVm-SLGRNWHRPCLRCQ--RCHKTLTag-sHAEHDgVPYCHvpCY 177  human
XP_001743274 851 CPSCGKSVYFAEKHt-ALGKDWHKMCLKCE--KCKKILAng-sFLEHGgKPYCQkpCY 904  Monosiga brevicollis MX1
XP_002131817   5 CAGCGKTVYFAEKIt-AIKKTWHKPCLRCE--KCKKTLQpg-kLSEHDdKPYCNipCY 58   Ciona intestinalis
CAX69334       3 CPVCNKEVYFAERVg-SLGRDWHRQCLKCE--RCFRPIVpg-sLCTRDgKIYCDkpCY 56   Schistosoma japonicum
EFA85845      71 CPRCGKKAYENEKKv-FNSRDWHKSCFSCF--KCKKSLVsg-qYSERNgLVFCPr-CY 123  Polysphondylium pallidum PN500
XP_002643501   5 CPACGKLVYFAEKIf-ALGADWHKSCFKCTnkECKKILTlg-kQVDKNqKPYCAh-CY 59   Caenorhabditis briggsae
T16110         4 CPRCQKAVYFAERVt-SIGFDWHRPCLRCEneACKKTLAag-sHSEREgKPYCNr-CY 58   nematode
XP_001188306   4 CPKCNKAVYFVEEAk-ALGKSWHKTCLKCAntACNKTLTpg-nFSDKEgQPYCNp-CY 58   purple urchin
XP_002508862 153 CPKCSKTVYFAERVvgLNGTEWHKGCLRCE--GCEKTLGsvaeITDHKgEPYCKv-CY 207  Micromonas sp. RCC299

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