1RUT,2DFY


Conserved Protein Domain Family
LIM2_LMO4

?
cd09387: LIM2_LMO4 
Click on image for an interactive view with Cn3D
The second LIM domain of LMO4 (LIM domain only protein 4)
The second LIM domain of LMO4 (LIM domain only protein 4): LMO4 is a nuclear protein that plays important roles in transcriptional regulation and development. LMO4 is involved in various functions in tumorigenesis and cellular differentiation. LMO4 proteins regulate gene expression by interacting with a wide variety of transcription factors and cofactors to form large transcription complexes. It can interact with Smad proteins, and associate with the promoter of the PAI-1 (plasminogen activator inhibitor-1) gene in a TGFbeta (transforming growth factor beta)-dependent manner. LMO4 can also form a complex with transcription regulator CREB (cAMP response element-binding protein) and interact with CLIM1 and CLIM2. In breast tissue, LMO4 interacts with multiple proteins, including the cofactor CtIP [CtBP (C-terminal binding protein)-interacting protein], the breast and ovarian tumor suppressor BRCA1 (breast-cancer susceptibility gene 1) and the LIM-domain-binding protein LDB1. Functionally, LMO4 is shown to repress BRCA1-mediated transcription activation, thus invoking a potential role for LMO4 as a negative regulator of BRCA1 in sporadic breast cancer. LMO4 also forms complex to both ERa (oestrogen receptor alpha), MTA1 (metastasis tumor antigen 1), and HDACs (histone deacetylases), implying that LMO4 is also a component of the MTA1 corepressor complex. Over-expressed LMO4 represses ERa transactivation functions in an HDAC-dependent manner, and contributes to the process of breast cancer progression by allowing the development of Era-negative phenotypes. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
?
PSSM-Id: 188773
Aligned: 12 rows
Threshold Bit Score: 98.3251
Created: 3-Aug-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1RUT_X: Mouse LMO4 LIM2 domain binds Zn
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #  #                  #  # 
1RUT_X        72 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126 house mouse
2DFY_X        70 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 124 house mouse
NP_817093     88 CSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDR 142 zebrafish
NP_989443     87 CSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 141 chicken
Q8AW92        88 CNACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDR 142 African clawed frog
XP_001629379  83 CAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCENDD 137 starlet sea anemone
NP_956566     98 CRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHYANGKLYCERDK 152 zebrafish
XP_002740222 107 CSSCGQSIPASELVMRAQGNVYHQKCFACTSCHNQLVPGDRFLIVNGNLFCETDH 161 Saccoglossus kowalevskii
XP_001190674 116 CTACGQQIPANELVMRTQNRVYHLKCFACSSCHIQLVPGDRYTVVNGSIVCENDH 170 purple urchin
XP_002401762  11 CSGCGQMIPANDYVMRAAQNVYHVKCFACVKCHSQLVPGDRYNLVNGSVLCEQDC 65  black-legged tick
XP_396576    257 CAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLLSGSPVCETDW 311 honey bee
XP_001599629 196 CAACGQTIAATELVTRAGGNVFHPKCFTCTKCGTQLTQGDRYYLLSGAAVCETDF 250 jewel wasp

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap