Conserved Protein Domain Family
LIM2_AWH

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cd09379: LIM2_AWH 
The second LIM domain of Arrowhead (AWH)
The second LIM domain of Arrowhead (AWH): Arrowhead belongs to the LHX protein family, which features two tandem N-terminal LIM domains and a C-terminal DNA binding homeodomain. Members of LHX family are found in the nucleus and act as transcription factors or cofactors. LHX proteins are critical for the development of specialized cells in multiple tissue types, including the nervous system, skeletal muscle, the heart, the kidneys, and endocrine organs such as the pituitary gland and the pancreas. During embryogenesis of Drosophila, Arrowhead is expressed in each abdominal segment and in the labial segment. Late in embryonic development, expression of arrowhead is refined to the abdominal histoblasts and salivary gland imaginal ring cells themselves. The Arrowhead gene required for establishment of a subset of imaginal tissues: the abdominal histoblasts and the salivary gland imaginal rings. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188765
Aligned: 17 rows
Threshold Bit Score: 113.287
Created: 16-Nov-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #  #                  #  # 
XP_002609417 112 CAKCCRNIqsnDWVRRAKtHVYHLACFACDACKRQLSTGEEFALHDGKVLCKSHY 166 Florida lancelet
XP_002740254  83 CSRCMRNIqsnDWVRKAKnHVYHLACFACDNCKRQLSTGEEFAMQENKVLCKTHY 137 Saccoglossus kowalevskii
XP_002156835  19 CSSCSRPIqltDWIRRAKqNVYHLACFSCDICKRQLSTGEEFAFIEDSILCKLHY 73  green hydra
NP_508669    168 CASCDRTIqatDWVRRARnYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF 222 nematode
XP_785118    127 CARCLRNIdasDWVRRAReNIYHLACFACDNCKRQLSTGEEFAMIENRVLCKSHY 181 purple urchin
XP_001626470  89 CARCGRSIhanDWVRRAKnCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHY 143 starlet sea anemone
XP_002644438 160 CASCGRKIgaaDWVRRARnFVYHLACFACNQCKRQLSTGEEYSLQEEHLLCKQHY 214 Caenorhabditis briggsae
XP_001121365 103 CAKCGRSVgagDWVRRAReRVYHLACFACDACSRQLSTGEQFALLDARLLCKAHY 157 honey bee
XP_001237835  69 CAKCARSIsatDWVRRAReYVFHLACFACDSCGRQLSTGEQFAICEDRVLCKTHY 123 Anopheles gambiae str. PEST
XP_316578     84 CARCSRTIsatDWVRRARdLIFHLACFACDSCGRQLSTGEQFALVDDKVLCKTHY 138 Anopheles gambiae str. PEST

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