Conserved Protein Domain Family
LIM1_AWH

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cd09373: LIM1_AWH 
The first LIM domain of Arrowhead (AWH)
The first LIM domain of Arrowhead (AWH): Arrowhead belongs to the LHX protein family, which features two tandem N-terminal LIM domains and a C-terminal DNA binding homeodomain. Members of LHX family are found in the nucleus and act as transcription factors or cofactors. LHX proteins are critical for the development of specialized cells in multiple tissue types, including the nervous system, skeletal muscle, the heart, the kidneys, and endocrine organs, such as the pituitary gland and the pancreas. During embryogenesis of Drosophila, Arrowhead is expressed in each abdominal segment and in the labial segment. Late in embryonic development, expression of arrowhead is refined to the abdominal histoblasts and salivary gland imaginal ring cells themselves. The Arrowhead gene required for establishment of a subset of imaginal tissues: the abdominal histoblasts and the salivary gland imaginal rings. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188759
Aligned: 12 rows
Threshold Bit Score: 87.8169
Created: 3-Aug-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                  #  # 
NP_728906      8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLdrqQSCFIRERQVYCKADY 61  fruit fly
XP_001949712  53 CRGCSDPITDRFLLKVSDKIWHVSCLRCCVCNLVLedePSCFIKDDSIYCRQDY 106 pea aphid
XP_002410980   7 CSACGELIADRFLLKVSDTSWHARCLRCCVCQTPLdhqPSCFVRHGSVYCRPDY 60  black-legged tick
EFA01311      69 CSACGEPISDKFLLEVSGRSWHARCLRCCVCQLQLdrqPSCFIRDRAIYCKADY 122 red flour beetle
XP_316578     23 CTACGEPISDQFLLDVGGCSWHSACLRCCICHTPLdhqPSCFLRERQIYCKTDY 76  Anopheles gambiae str. PEST
XP_001661512  22 CTACGEPIADKYLFDVDGCSWHGSCLRCSVCLTLLerqPSCYFRDRQVYCRSDY 75  yellow fever mosquito
XP_001626470  28 CVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELgreATCYTKDGKIYCKADY 81  starlet sea anemone
XP_002609417  51 CTGCGGPIQDKFLLKVGERQWHVKCLRCSVCQTPLgrhTTCYTREADVFCKADY 104 Florida lancelet
XP_002740254  22 CLGCTSPIQDRYLLKVGTRSWHVRCLRCCICQTGLggqQSCFTKDDNIYCKMDY 75  Saccoglossus kowalevskii
XP_001844875   8 CGGCSEQITDRYIFEVSGCAWHGACLRCSVCYCPLerqVSCYFKDGEVYCKTDY 61  southern house mosquito
XP_001237835   8 CGSCAEPITDRYIFEVNGSAWHGSCLRCTVCFCPLerqVSCYLRDGDMYCKSDY 61  Anopheles gambiae str. PEST
XP_001636286   1 CTGCNEPIEDRFLMKVVDEAWHESCLQCCICRSQLs--RSCFSKDRKLYCRTDY 52  starlet sea anemone

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