Conserved Protein Domain Family
LIM1_Lmx1b

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cd09371: LIM1_Lmx1b 
The first LIM domain of Lmx1b
The first LIM domain of Lmx1b: Lmx1b belongs to the LHX protein family, which features two tandem N-terminal LIM domains and a C-terminal DNA binding homeodomain. Members of LHX family are found in the nucleus and act as transcription factors or cofactors. LHX proteins are critical for the development of specialized cells in multiple tissue types, including the nervous system, skeletal muscle, the heart, the kidneys, and endocrine organs, such as the pituitary gland and the pancreas. In mouse, Lmx1b functions in the developing limbs and eyes, the kidneys, the brain, and in cranial mesenchyme. The disruption of Lmx1b gene results kidney and limb defects. In the brain, Lmx1b is important for generation of mesencephalic dopamine neurons and the differentiation of serotonergic neurons. In the mouse eye, Lmx1b regulates anterior segment (cornea, iris, ciliary body, trabecular meshwork, and lens) development. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188757
Aligned: 13 rows
Threshold Bit Score: 80.1144
Created: 15-Sep-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                #  #  
AAT42258      33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQPLTTSCYFRErKLYCKYDYQ 85  zebrafish
NP_001083902  56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDrKLFCKQDYQ 108 African clawed frog
O60663        33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDrKLYCKQDYQ 85  human
P53413        33 CEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTTSCYFRDrKLYCKQDYQ 85  chicken
AAT42259      33 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMSCYSRDhKLYCKHDYQ 85  zebrafish
NP_001071756 166 CQGCDYLIEDQYLLNIGGFSWHESCAKCVICRLKLQQSCFFSDgQLYCKKDYQ 218 Ciona intestinalis
XP_002933954 186 CAGCGNTISDRFLLRVNDRSWHECCVKCAACLQILSGTCYYRNrQLYCKEDYD 238 western clawed frog
XP_002576241   9 CAGCHQPIWDPYLLCIDHNTWHEQCVTCSICHCLLHDKCLVRNeKLYCRNDYI 61  Schistosoma mansoni
NP_001071998  53 CAGCRQPIYDKYYMWVDQRSWHEECVQCSVCRRPLVESCFTKDcKLYCQQDYK 105 Ciona intestinalis
XP_002738638  41 CAGCQQPIEDRFLMRVMENSWHEQCLQCSVCQSPLSRSCYFKDrKLYCKGDYE 93  Saccoglossus kowalevskii
XP_790548     32 CAGCQRAIDDRYLMKVMDHCWHEQCLQCSVCRIRLSHSCFARDrKLYCKLDYE 84  purple urchin
XP_002416451  47 CAGCGLPIVDRYILRVMEHSWHESCLQCSVCHAPLEQSCYSRDkKLFCKADYD 99  black-legged tick
CAG12172       1 CAGCEAPIADRFLLRVNERSWHETCVKCAVCLSALTGTCYCRDrLLYCKHDYE 53  spotted green pufferfish

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