Conserved Protein Domain Family
LIM3_Zyxin_like

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cd09357: LIM3_Zyxin_like 
The third LIM domain of Zyxin-like family
The third LIM domain of Zyxin like family: This family includes Ajuba, Limd1, WTIP, Zyxin, LPP, and Trip6 LIM proteins. Members of Zyxin family contain three tandem C-terminal LIM domains, and a proline-rich N-terminal region. Zyxin proteins are detected primarily in focal adhesion plaques. They function as scaffolds, participating in the assembly of multiple interactions and signal transduction networks, which regulate cell adhesion, spreading, and motility. They can also shuffle into nucleus. In nucleus, zyxin proteins affect gene transcription by interaction with a variety of nuclear proteins, including several transcription factors, playing regulating roles in cell proliferation, differentiation and apoptosis. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188743
Aligned: 14 rows
Threshold Bit Score: 105.968
Created: 22-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                       #  #  #  #                     #  # 
AAA17420     435 CAVCSKPIVPEEGqeesIRIVAMDKSFHVNCYRCEDCNMQLnskiegqgCYPLDQHLYCKNCN 497 Acanthocheilonema viteae
XP_418800    505 CAACGLPILPSEGsdetIRVVSMDKDYHVECYHCEDCGMELnded-ghrCYPLDDHLLCHSCH 566 chicken
NP_957492    480 CSVCNEPIMPAPGqeetVRIVALDRDFHVQCYRCEDCGCLLsegd-nqgCYPLDGHVLCKNCN 541 zebrafish
NP_496776    531 CALCSKPIVPQDGekesVRVVAMDKSFHVDCYKCEDCGMQLssklegqgCYPIDNHLLCKTCN 593 nematode
XP_001652822 514 CCVCNNPIMPEPGqdetIRVVALDRSFHINCYKCEDCGLLLsseaegrgCYPLDDHIYCKSCN 576 yellow fever mosquito
Q71FD7       305 CSICENPIIPRDGkd-aFKIECMGRNFHENCYRCEDCSVLLsveptdqgCYPLNDHLFCKPCH 366 house mouse
XP_001631644 156 CASCHQLILPEDGqdetVRIVSMNKDFHVRCYKCEDCNKQLssekggsgCYPLDGHLLCQDCN 218 starlet sea anemone
AAB62222     399 CSVCGGAIMPEPGqeetVRIVALDRSFHIGCYKCEECGLLLssegecqgCYPLDGHILCKACS 461 human
XP_002127721 393 CSVCQEAIMPEKGkeetVRIVALERSFHVDCYKCEKCAVKLnsekegrgCFPLDGHIFCRDCN 455 Ciona intestinalis
NP_001004386 472 CSVCSEPIMPEPGkdetVRVVALEKNFHMKCYKCEDCGRPLsieadengCFPLDGHVLCMKCH 534 chicken

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