Conserved Protein Domain Family
LIM1_Zyxin

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cd09349: LIM1_Zyxin 
The first LIM domain of Zyxin
The first LIM domain of Zyxin: Zyxin exhibits three copies of the LIM domain, an extensive proline-rich domain and a nuclear export signal. Localized at sites of cell substratum adhesion in fibroblasts, Zyxin interacts with alpha-actinin, members of the cysteine-rich protein (CRP) family, proteins that display Src homology 3 (SH3) domains and Ena/VASP family members. Zyxin and its partners have been implicated in the spatial control of actin filament assembly as well as in pathways important for cell differentiation. In addition to its functions at focal adhesion plaques, recent work has shown that zyxin moves from the sites of cell contacts to the nucleus, where it directly participates in the regulation of gene expression. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein.
Statistics
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PSSM-Id: 188735
Aligned: 4 rows
Threshold Bit Score: 141.915
Created: 26-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                         #  #                  #  #  #  #               
NP_001004386 319 LTMKEVEELELLTQKLMKDMDHPPPVEaatselCGFCRKPLSRtqpaVRALDCLFHVECFTCFKCEKQLQGQQFYNVDEK 398 chicken
NP_001121237 442 LNMKEVEELEMLTQQLMQEMDKPPAAEahtmelCGICGRGLSRtetvVRAGEHLYHVACFTCSRCDQQLQGQQYYESEGK 521 African clawed ...
Q62523       343 LTLKEVEELEQLTQQLMQDMEHPQRQSvavnesCGKCNQPLARaqpaVRALGQLFHITCFTCHQCQQQLQGQQFYSLEGA 422 house mouse
XP_001362993 334 LTLREVEELEELTQQLMKDMEQPTSNKpptnewCGRCHQALVRsqpaVRALGRLFHVTCFTCHQCERQLQGQQFYSLEGA 413 gray short-tail...
Feature 1          #  # 
NP_001004386 399 PFCEDCY 405 chicken
NP_001121237 522 PLCEECY 528 African clawed frog
Q62523       423 PYCEGCY 429 house mouse
XP_001362993 414 PYCEQCY 420 gray short-tailed opossum

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