2IYB


Conserved Protein Domain Family
LIM3_Testin_like

?
cd09342: LIM3_Testin_like 
Click on image for an interactive view with Cn3D
The third LIM domain of Testin-like family
The third LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
?
PSSM-Id: 188728
Aligned: 9 rows
Threshold Bit Score: 82.8264
Created: 12-May-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2IYB_A: Human Testin protein LIM3 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #    #  #  #                 #   # 
2IYB_E         5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVeCK 61  human
NP_501190    397 CDTCQSKIGPDEKRLNYNETHWHAEERCFQCVQCKMNLIGKKFMLKNHKLLCSSqCK 453 nematode
XP_002159631 312 CDACGEPIGIDVGQMAHGSQHWHANEKCFSCFTCGLSLLGQPFLPKNGEIFCSSsCS 368 green hydra
XP_002734641 695 CQACKGKISADAQRLSHKEFHWHANEQCFCCSNCNTNLLGKQFLPKAGHIFCSVkCK 751 Saccoglossus kowalevskii
XP_781432    223 CTSCGMKIGAGVPRLSHNEHHWHADDDCFRCSNCKTTLVGKSFLPKEGYIFCSTkCK 279 purple urchin
XP_001641861 297 CDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALLGLPFLPKSGEIYCSPdCS 353 starlet sea anemone
CAG11316     207 CDACGEHIGIDQGQMTYDGQHWHATEECFCCAHCKRSLLGRPFLPKQGQIFCSRsCS 263 spotted green pufferfish
XP_002186950 262 CQACGDPIGADSEEVAHQGLHWHARASCFCCSRCQAPLRGQPLTCRRGRLFCSGtCG 318 zebra finch
NP_001120115 238 CEACGEPVDPDGDIVAFRGQYWHALPSCFCCSNCRISLQRSQFMVTNGQIFCSP-CA 293 western clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap