Conserved Protein Domain Family
LIM1_Testin_like

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cd09340: LIM1_Testin_like 
The first LIM domain of Testin-like family
The first LIM domain of Testin_like family: This family includes testin, prickle, dyxin and LIMPETin. Structurally, testin and prickle proteins contain three LIM domains at C-terminal; LIMPETin has six LIM domains; and dyxin presents only two LIM domains. However, all members of the family contain a PET protein-protein interaction domain. Testin is a cytoskeleton associated focal adhesion protein that localizes along actin stress fibers, at cell-cell-contact areas, and at focal adhesion plaques. Testin interacts with a variety of cytoskeletal proteins, including zyxin, mena, VASP, talin, and actin and it is involved in cell motility and adhesion events. Prickles have been implicated in roles of regulating tissue polarity or planar cell polarity (PCP). Dyxin involves in lung and heart development by interaction with GATA6 and blocking GATA6 activated target genes. LIMPETin might be the recombinant product of genes coding testin and four and half LIM proteins and its function is not well understood. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188726
Aligned: 44 rows
Threshold Bit Score: 86.5012
Created: 10-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                      #  #  #  #                 #  # 
Q7Z3G6       130 CEQCGGQINGGdiavfasraGHGVCWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHH 187 human
XP_002425220 146 CPTCHHFIKPGdlgvvapkfGEDVVWHPGCFVCSECNEILVDLTYCVHDNLLYCERHY 203 human body louse
XP_002163384 189 CHNCSMNISSGemavfterlGESFCWHPQCFKCCIDDELLVDLIYFVHEMKIYCGRHW 246 green hydra
XP_001949083 331 CKQCNKNVIPGqvavmaertGKEVFWHPPCFVCATCEELLVDLVYFYYSENVYCGRHY 388 pea aphid
XP_002432995 453 CLQCLGILNPDevivqaergGNFALWHAKCFVCESCKELLVDLMYFFHKGKVYCGRHY 510 human body louse
XP_623970    206 CHKCKEEIHVGdvav-itekAKNAIWHPGCFVCNMCNELLVDLVYFYYKNKLYCGRDL 262 honey bee
XP_001603931 722 CHNCDENIHCGdvvv-taekIKDAVWHPGCFVCCACNELLVDLVYFTHKGKLYCGRDL 778 jewel wasp
XP_001653773 574 CNGCSTSITFGevvvtaervGSNAAWHPQCFKCHKCSELLADLVYFYHGGQVYCGRDL 631 yellow fever mosquito
EFN69581     622 CEKCHEDIRIGdviv-taekANNAFWHPGCFVCSMCNELLVDLVYFYYNNKLYCGRDL 678 Camponotus floridanus
EFN77381     642 CRKCHEDIRIGdvvv-ivekAKDASWHPGCFVCSVCNELLMDLVYFHYKNELYCERDL 698 Harpegnathos saltator

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