1X3H


Conserved Protein Domain Family
LIM3_Paxillin_like

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cd09338: LIM3_Paxillin_like 
Click on image for an interactive view with Cn3D
The third LIM domain of the paxillin like protein family
The third LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188724
Aligned: 17 rows
Threshold Bit Score: 81.2274
Created: 23-Apr-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1X3H_A: Human Leupaxin LIM3 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  #  
1X3H_A        18 CGGCNRPVLenYLSAMDTVWHPECFVCGDCFTSFstgsFFELDGRPFCELHYH 70  human
NP_001021185 294 CNGCSQPITsnFITALGTHWHPDCFVCQHCGVSFngasFFEHNGAPLCERHYH 346 nematode
XP_002127320 343 CGGCMKPILtnYISALNAQWHPECFVCRECLAPFtngsFFELDGQPYCETHYH 395 Ciona intestinalis
NP_001081420 433 CGGCTHAILenYISALNTLWHPECFVCRECFTPFingsFFEHDGQPYCEMHYH 485 African clawed frog
Q2TCH4       391 CAGCTEAVKesYISALGGLWHPQCFVCHVCHTPFingsFFEHEGLPLCETHYH 443 African clawed frog
NP_001133443 387 CQGCTQPILenYISALNSLWHPQCFVCRECYCPFvngsFFEHEGQPLCEAHYH 439 Atlantic salmon
Q62219       346 CQGCQGPILdnYISALSALWHPDCFVCRECLAPFsggsFFEHEGRPLCENHFH 398 house mouse
XP_001900435 287 CNGCKNPIKmhFITALGTHWHPECFICQECGKAFetgsFYEHGNVPLCEMHYH 339 agent of lymphatic filariasis
XP_780574    580 CGGCNRAIMenFITALNAQWHPECFVCSDCRVPFnegdFFDHDGVPYCEIHYH 632 purple urchin
XP_001633244 144 CGGCGQPIMdnYISALSAHWHAECFICTECRQPFpggsFFDHDGRPYCEMHYH 196 starlet sea anemone

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