Conserved Protein Domain Family
LIM2_Paxillin_like

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cd09337: LIM2_Paxillin_like 
The second LIM domain of the paxillin like protein family
The second LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188723
Aligned: 13 rows
Threshold Bit Score: 104.008
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  # 
XP_002407362 389 CAYCNGPIldkcVTALDKTWHPEHFFCAQCGKQFgegGFHEKDGKPYCKEDY 440 black-legged tick
XP_001633244  85 CAYCNGPIldscVTALDQTWHPEHFVCAECGNPFgdtGFHERDGKPFCREDY 136 starlet sea anemone
XP_002127320 284 CAYCVQPVlgqcVTALNKTWHPEHFFCAMCSNFFgdeGFHEFEGKPYCRADY 335 Ciona intestinalis
P49023       417 CYYCNGPIldkvVTALDRTWHPEHFFCAQCGAFFgpeGFHEKDGKAYCRKDY 468 human
XP_421060    235 CAYCAGPIrervLSAMDQTWHPEHFFCAHCGKVFgddGFHERGGKPYCFQDF 286 chicken
XP_002731132 728 CAYCHGPIlekcVTALDKTWHPEHFFCAQCGRHFadeGFHEKDGKAFCRDDY 779 Saccoglossus kowalevskii
XP_780574    521 CAYCHGPIkdrcVTALDKTWHPEHFFCAQCGKTFgedGFHEKNGRAYCKEDY 572 purple urchin
NP_001033913 407 CAYCNGAIldkcVTALDKTWHTEHFFCAQCGQQFgeeGFHERDGKPYCRNDY 458 fruit fly
ACE75737     275 CAQCHGPIldkcVTALDKTWHPEHFVCYSCGKELgdvGFHEKDGLVFCRTYY 326 medicinal leech
XP_002168161 260 CFACQGPIldscVTSMDHTWHPEHFVCFECNLPFgdsGFHEKDGKAYCREDY 311 green hydra
XP_001900435 228 CAYCNGPIkdrcVTALGKTFHAEHFVCAECGRQFgeeGFHEKNGQPYCKTDF 279 agent of lymphatic filariasis
Q62219       287 CGFCNQPIrhkmVTALGTHWHPEHFCCVSCGEPFgeeGFHEREGRPYCRRDF 338 house mouse
Q2TCH4       332 CALCELPIvqnmVTALGCTWHPEHFCCKVCKKPIgeeGFHEKDGEQYCSDDY 383 African clawed frog

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