1U5S


Conserved Protein Domain Family
LIM4_PINCH

?
cd09334: LIM4_PINCH 
Click on image for an interactive view with Cn3D
The fourth LIM domain of protein PINCH
The fourth LIM domain of protein PINCH: PINCH plays a pivotal role in the assembly of focal adhesions (FAs), regulating diverse functions in cell adhesion, growth, and differentiation through LIM-mediated protein-protein interactions. PINCH comprises an array of five LIM domains that interact with integrin-linked kinase (ILK), Nck2 (also called Nckbeta or Grb4) and other interaction partners. These interactions are essential for triggering the FA assembly and for relaying diverse mechanical and biochemical signals between Cell-extracellular matrix and the actin cytoskeleton. The PINCH LIM4 domain recognizes the third SH3 domain of another adaptor protein, Nck2. This step is an important component of integrin signaling event. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assem bly of multimeric protein complexes.
Statistics
?
PSSM-Id: 188720
Aligned: 19 rows
Threshold Bit Score: 77.3952
Created: 23-Apr-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding siteN(i)ck binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1U5S_B: Human Pinch-1 LIM4 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #                 #  #  #  #                   #  # 
1U5S_B          6 PICGACRRPIEgr-vVNAMGKQWHVEHFVCAKCEKPFLGh--RHYERKGLAYCETHY 59   human
XP_793010     196 PICKACHRPIEer-iVTALGKHWHVEHFVCARCEKPFLGh--KHYEKNGKAYCETHY 249  purple urchin
XP_002406850  174 SVCAACRRPIEdtrvVCALGKKWHVEHFVCAQCEKPFNGr--RHYEKKGHAYCETHF 228  black-legged tick
XP_002129223  259 PICGACRRPIEer-vVSAMGKHWHVEHFVCAQCEKPFLGq--KHYEKNGHAYCELHY 312  Ciona intestinalis
AAX25764      216 PICGACRRPIEer-vVHALGKTWHVEHFVCARCEKPFLGs--RHYEKKGLAYCELHY 269  Schistosoma japonicum
XP_002108081  191 PICAACKRPITdvhiVAALGKSWHADHFACAKCEKPFHGr--PHYEHNGLAYCETHY 245  Trichoplax adhaerens
AAX26687      215 SICSACRRPIDgr-iVWALGKVWHVEHFVCHHCEIPFMGs--RFYEWQGHAYCLLHY 268  Schistosoma japonicum
EAW95334       57 KYCEHDFQMLFap-cCGSCGEFIIGRHFVCAKCEKPFLGh--RHYEKKGLAYCETHY 110  human
XP_002593003   25 PVCNGCGEEITgp-sVTGMNRKWHPEHFTCSVCGVPFEQlnrVYYEYSGRAYCKRHY 80   Florida lancelet
XP_002592999 2175 NTCWVCGEEITgm-mIVALGRYWHAEHFRCARCGIPFKAvglPHYEHGGKPYCEQHF 2230 Florida lancelet

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap