1WIG


Conserved Protein Domain Family
LIM4_abLIM

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cd09330: LIM4_abLIM 
Click on image for an interactive view with Cn3D
The fourth LIM domain of actin binding LIM (abLIM) proteins
The fourth LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188716
Aligned: 19 rows
Threshold Bit Score: 107.06
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1WIG_A: Human abLIM LIM4 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                 #  #  #  #                  #  #    
1WIG_A         8 CDSCEKYITGRVLe-AGEKHYHPSCALCVRCGQMFaEGEEMYLQGSSIWHPACRQAA 63  human
XP_002157679 199 CSGCGGYITGKVLq-AGEKHYHPHCARCAKCTQMFgEGEEMYLQGSDIWHPHCSEEY 254 green hydra
Q8K4G5       285 CEACHQFITGKVLe-AGDKHYHPSCARCSRCNQMFtEGEEMYLQGSTVWHPDCKQST 340 house mouse
NP_001152835 219 CEACHQFITGKVLe-AGDKHYHPSCARCSRCNQMFtEGEEMYLQGSTVWHPDCKQST 274 chicken
ACU45745     151 CAYCSRFISGKVLqaGDNHHFHPTCARCTKCGDPFgDGEEMYLQGSAIWHPRCGPGP 207 fruit fly
XP_784724     60 CSRCDNFITGKVLe-AGDHKYHPTCAKCGRCGNHFnEGEDMFVQGTEIWHPDCRKGR 115 purple urchin
NP_001121228   7 CEACHDFITGKVLe-AGDKHYHPSCARCSRCNQMFtEGEEMFLQGSTVWHPYCKETT 62  African clawed frog
CAG04341     240 CDACQKFITGKVLe-AGVKHYHPTCARCSQCGKLFtEGDEMYLQGSAVWHPHCRNSS 295 spotted green pufferfish
CAX14081     246 CEACQQFITGKVLe-AGDKHYHPSCARCSRCNQMFtEGEEMYLQGSTVWHPSCKHSP 301 zebrafish
XP_001635264 209 CAACNGYITGKVLq-AGNKHYHPKCSRCARCNNIFgEGEEMFLQGNEIWHPKCSDEA 264 starlet sea anemone

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