3A0B


Conserved Protein Domain Family
Photosystem-II_D2

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cd09288: Photosystem-II_D2 
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D2 subunit of photosystem II (PS II)
Photosystem II (PS II), D2 subunit. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Molecular dioxygen is released as a by-product. PS II can be described as containing two parts: the photochemical part and the catalytic part. The photochemical portion promotes the fast, efficient light-induced charge separation and stabilization that occur when light is absorbed by chlorophyll. The catalytic portion, where water is oxidized, involves a cluster of Mn ions close to a redox-active tyrosine residue. The Mn cluster and its ligands form a functional unit called the oxygen-evolving complex (OEC) or the water-oxidizing complex (WOC). The D1 and D2 subunits are a pair of intertwined polypeptides. They contain all the cofactors involved directly in water oxidation and plastoquinone reduction. D1 and D2 are highly homologous and are also similar to the L and M proteins in bacterial photosynthetic reaction centers.
Statistics
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PSSM-Id: 187746
Aligned: 11 rows
Threshold Bit Score: 675.545
Created: 27-Sep-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 49 residues -Click on image for an interactive view with Cn3D
Feature 1:chlorophyll binding site
Evidence:
  • Structure:3A0B_D; Thermosynechococcus vulcanus PSII binds chlorophyll A, defined using 4.0 A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             ##  ##  # #                                           #####
3A0B_D         2 WFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLW 81  Thermosynechoco...
YP_002836085  15 LFDTMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW 94  Megaleranthis s...
NP_042470     15 LFDTVDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW 94  Japanese black ...
NP_050845     14 LFDDMDDWLRRDRFVFVGWSGLLLLPCAYFAVGGWLTGTTFVTSWYTHGLASSYLEGCNVLTAAVSTPANSMAHSLLLLW 93  Nephroselmis ol...
NP_904207     15 LFDSMDDWLRRDRFVFVGWSGLLLFPCAYFSLGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW 94  Physcomitrella ...
NP_958420     14 WFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMAHSLLFVW 93  Chlamydomonas r...
NP_045801     14 LFDVVDDWLRRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMGHSLLFLW 93  Chlorella vulgaris
NP_043689     13 LFDLIDDWLKKDRFVFIGWSGLLLFPTAYLAAGGWMTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLLLW 92  Odontella sinensis
P28253        13 LFDLVDDWLKRDRFVFIGWSGLLLFPCSYLALGAWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLW 92  Galdieria sulph...
NP_050678     13 WFDLVDDWLKRDRFVFIGWSGLLLFPTSYLSIGGWFTGTTFVTSWYTHGLASSYLEGCNFFTAAVSTPANSMGHSLLLLW 92  Guillardia theta
P31557        14 WFDVADDWLKKDRFIFIGWSGLLLFPCSYLALGGWLTGITFVTSWYTHGLASSFLEGCNALTAAVSTPPNSMGHSLLLLL 93  Euglena gracilis
Feature 1                  #       ##  ##  # ##  ##  #                     # # ####              
3A0B_D        82 GPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSsWFFAPSF 161 Thermosynechoco...
YP_002836085  95 GPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSgWFFAPSF 174 Megaleranthis s...
NP_042470     95 GPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSAPIAVFVSVFLIYPLGQSgWFFAPSF 174 Japanese black ...
NP_050845     94 GPEAQGDFTRWCQLGGLWTFIALHGSFGLIGFMLRQFEIARAIGLRPYNAIAFSGPISVFVSVFLIYPLGQSgWFFAPSF 173 Nephroselmis ol...
NP_904207     95 GPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSgWFFAPSF 174 Physcomitrella ...
NP_958420     94 GPEAQGDFTRWCQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQSgWFFAPSF 173 Chlamydomonas r...
NP_045801     94 GPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARSVKIRPYNAIAFSAPISVFVSVFLIYPLGQSgWFFAPSF 173 Chlorella vulgaris
NP_043689     93 GPEAQGDFTRWCQIGGLWAFIALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQAsWFFAPSF 172 Odontella sinensis
P28253        93 GPEAQGDFTRWCQIGGLWTFTALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLIYPLGQAsWFFAPSF 172 Galdieria sulph...
NP_050678     93 GPEAQGDFTRWCQIGGLWAFCALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQAsWFFAPSL 172 Guillardia theta
P31557        94 GSEAQWDFTRWLQIGGLWPFIALHGAFGLIGFMLRQFEIAKAVQIRPYNAIAFSAPISVFVSVFLIYPLGQSgWFFAPSF 173 Euglena gracilis
Feature 1         #  ## ##  ##    #     ## ### ###  #                                            
3A0B_D       162 GVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFW 241 Thermosynechoco...
YP_002836085 175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW 254 Megaleranthis s...
NP_042470    175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW 254 Japanese black ...
NP_050845    174 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW 253 Nephroselmis ol...
NP_904207    175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFW 254 Physcomitrella ...
NP_958420    174 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW 253 Chlamydomonas r...
NP_045801    174 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFW 253 Chlorella vulgaris
NP_043689    173 GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFW 252 Odontella sinensis
P28253       173 GVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFW 252 Galdieria sulph...
NP_050678    173 GVAAIFRFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQSEETYSMVTANRFW 252 Guillardia theta
P31557       174 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDSPNTFRAFNPLQSEETYSMVTANRFW 253 Euglena gracilis
Feature 1                                 #  ##  #                                               
3A0B_D       242 SQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQD 321 Thermosynechoco...
YP_002836085 255 SQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 334 Megaleranthis s...
NP_042470    255 SQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPESETFYTKNILLNEGIRAWMAAQD 334 Japanese black ...
NP_050845    254 SQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQELRAAEDPEFETFYTKNLLLNEGIRAWMAAQD 333 Nephroselmis ol...
NP_904207    255 SQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 334 Physcomitrella ...
NP_958420    254 SQIFGVAFSNKRWLHFFMLLVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 333 Chlamydomonas r...
NP_045801    254 SQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 333 Chlorella vulgaris
NP_043689    253 SQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQD 332 Odontella sinensis
P28253       253 SQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIIGLALNLRAYDFVSQELRAAEDPEFETFYTKNLLLNEGIRAWMATQD 332 Galdieria sulph...
NP_050678    253 SQVFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNLLLNEGIRSWMAAQD 332 Guillardia theta
P31557       254 SQIFGVAFSNKRWLHFFMVFVPVTGLRMSALGIVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 333 Euglena gracilis
Feature 1                           
3A0B_D       322 QPHENFVFPEEVLPRGNAL 340 Thermosynechococcus vulcanus
YP_002836085 335 QPHENLIFPEEVLPRGNAL 353 Megaleranthis saniculifolia
NP_042470    335 QPHENLIFPEEVLPRGNAL 353 Japanese black pine
NP_050845    334 QPHEKLVFPEEVLPRGNAL 352 Nephroselmis olivacea
NP_904207    335 QPHENLVFPEEVLPRGNAL 353 Physcomitrella patens subsp. patens
NP_958420    334 QPHERLVFPEEVLPRGNAL 352 Chlamydomonas reinhardtii
NP_045801    334 QPHEKLVFPEEVLPRGNAL 352 Chlorella vulgaris
NP_043689    333 QPHENFVFPEEVLPRGNAL 351 Odontella sinensis
P28253       333 QPHENFVFPEEVLPRGNAL 351 Galdieria sulphuraria
NP_050678    333 QPHENFIFPEEVLPRGNAL 351 Guillardia theta
P31557       334 QPHEQFIFPEEVLPRGNAL 352 Euglena gracilis

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