3G9H


Conserved Protein Domain Family
AP_Syp1_MHD

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cd09264: AP_Syp1_MHD 
Click on image for an interactive view with Cn3D
mu-homology domain (MHD) of adaptor protein (AP), Syp1, and related proteins
This family corresponds to the MHD found in a novel endocytic adaptor Syp1 and related proteins. Syp1 is a poorly characterized yeast protein with multiple biological functions. It was originally identified as a suppressor of a yeast profiling deletion and later as a suppressor of arf3delta (Arf3 is the yeast homologue of Arf6, a mammalian regulator of endocytosis). Syp1 can bind to septins and physically link with cell polarity factors. It also directly binds to the endocytic adaptor/scaffold protein Ede1, and plays a role in endocytosis. Further studies show that Syp1 is itself an endocytic adaptor protein contributing to stress responses. Its mu-homology domain at the C-terminus binds to the cargo protein Mid2, a transmembrane stress sensor protein, and mediates Mid2 internalization. In addition, Syp1 contains an EFC/F-BAR domain which can induce membrane tabulation.
Statistics
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PSSM-Id: 271170
Aligned: 16 rows
Threshold Bit Score: 233.822
Created: 28-Sep-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3G9H; Saccharomyces cerevisiae Syp1C-terminal Mu-homology domain binds Pentaethylene glycol monomethyl ether, contacts calculated at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #               ###                                                     
3G9H_A         69 GLNASIAEVLNASFKdGMLQNSQLIGEIALNYLPnsvmn-splpIGINLRINNgakFEKVILNQAFIer--------vaP 139  baker's yeast
XP_451272      73 EINGDIVETLSCVITdDNITNVSLVGEVAINGTKwdq-----rtSDLYMKFNN---VSSVKINDTFLepv------dvvQ 138  Kluyveromyces...
Q7RZ47        598 GLHSSIIETVSALFQdGEAKSVKVTGEIALSYKSdphn---lqtDNQIIRLNNfarLESIGPNRLFVtsd------atsP 668  Neurospora cr...
XP_504872     760 PLRASIVEQINANIT-ETHSDVSVNGEVAIAYVPpssa---httDYLQVRLLDpspFAKFGANPSAVinpps---spseN 832  Yarrowia lipo...
XP_001545626  547 GLNASMIETVSAMIEnGAIKTVKVSGEIALSYISspndaslpasGTETIRINNfpaLEAIGPNRTFIhpvs-----aekS 621  Botryotinia f...
Q0UZZ0        598 GLNASLVETVSAWFEqGKVTKAMVIGQVALAYNPidls--sgpfGTESVRLENfpvLEKVAPNPAFIeqa------hdsP 669  Phaeosphaeria...
Q2UCN4        110 GLNASIIETVNAWFSdGVVTKSSVIGELALAYNGtp-------nANTTVRLENfqvLEKVAANPHFVseekdkdlsdekR 182  Aspergillus o...
NP_596299     553 GLSASIVEKYSGELSeDGLLHPSCSGHIFMKYTSdfn----tppPEMGVRVASefpMSFTHLNDHAVkyg-------psE 621  fission yeast
XP_002838922  536 GLSASLIESVSMSFEaGAPTKTLITGEIAVAYNPiepvsldqsfPAELVRMDNfsvLEKVAPNPAFIssv------pdrA 609  Tuber melanos...
Q6BT63        780 GLNSSIAEVINVNIKnDQLMKSQIIGEIAFNYKKqln----eqiEPIIIRIPNq--FDKIILNNTYIek--------lsN 845  Debaryomyces ...
Feature 1                            #                                                            
3G9H_A        140 EEFKVNPSFIds-rTLGAIKYSIKEp--------iAPIVIHPVWRFEshQASVVLTVKMSPslpde---isqivIEDLVV 207  baker's yeast
XP_451272     139 NIYKLKREREwdnvVTGLVKYAVTNlpq-----vqCPILVTPVWQFK--EAEIISMINLRPli----------pVNYTLL 201  Kluyveromyces...
Q7RZ47        669 DEFTINTSHLtt-iSTPAFTYRVHAendtalvsshCPISINPVWKPQgdKLGLLLQYRLNPsvtlq----rpivLHNVTF 743  Neurospora cr...
XP_504872     833 SLYNVNAHAIkg-rTSLGFKYSLTPdaa----aqsLPVVITPIWRFEptQARLMLSIKLSPsfpg-----eaatLTGGVF 902  Yarrowia lipo...
XP_001545626  622 DEFTVDLASVsh-kTSPAFTYRVHIddkd--magySPLLLKPAWKPVgdKLGLIIEYALNPdfsp-----daitFNNLVI 693  Botryotinia f...
Q0UZZ0        670 GNYTVDLSKIm--kTSVAFHYQLHIenen--vaalAPLILAPLWKTEasQASAILHYSLNPkfnlgg--atsvtIRNLVL 743  Phaeosphaeria...
Q2UCN4        183 GQYSIHIPTIarpsPIVAFKYQLHVdasd--ssayCPVIFKPVWNIEehQASVIVFYSLNPsftssv-presvtLKNLIL 259  Aspergillus o...
NP_596299     622 NTLSLIPELLl--sPIKVTDFNLHLdsin--gascIPLTVVQKWKHDesSSSMIAFVKPNPvwrnl---gsslhIEKLVI 694  fission yeast
XP_002838922  610 GEYTMSLANIh--kTSVAFKYQVHIdean--vavfAPIIATPIWRLEphQSSVIIHWKPNPgfrrlsgatgtftMKNVIF 685  Tuber melanos...
Q6BT63        846 EEFNINPELIvs-kTLGGMKYLKSItf------eeVPVLIQQIWKFEnhQSSLMISLKLNPnyss------nlvLNNLVI 912  Debaryomyces ...
Feature 1                                                                                         
3G9H_A        208 FVNIDGa--------nATSALSKP--QGSFSKEKKRITWRFKEPVvlt--rngEGQRLIARFITDGLAhesakGVITKFT 275  baker's yeast
XP_451272     202 KVCIKIgt-------kAQDILSKP--TGFYNQVDGTIQWDLPMLEqd----qiLILRYKGGQRTDVVTsqaigPPHVRID 268  Kluyveromyces...
Q7RZ47        744 VATYEGa--------rASGVQTKP--SGTHLKEKHLVYWRIPELTlt-----dDWAKIICRVIGEQNGepqpgHIEVRWE 808  Neurospora cr...
XP_504872     903 SVSVDGa--------nTLGAQSKP--VGSFSPERRRITWRLGDTQpfii-rkdAEQRLLCQFKTDGLVhpaatGVEARFT 971  Yarrowia lipo...
XP_001545626  694 VGKYAGv--------gAAVCKSKP--SGTHYRDKSAIVWRLGDVTlg-----hEWHKMSALFSGPDGAvqqpgHAEARWE 758  Botryotinia f...
Q0UZZ0        744 VVRLEPgs-------kATSCQSKP--SGTFSREKGLIYWRLGDVTfsk---dePTQTIRVRFITEGEAkp--gNVEARWE 809  Phaeosphaeria...
Q2UCN4        260 TVNLDTspeegrevahATSAVMYPntGASFRRKHSAVTWKLPEFEvt----agSDGKLLVRFSTATSWpr-kgKVEAKFE 334  Aspergillus o...
NP_596299     695 IVYLGEnv-------lVKSCQSSP--AGEFSRKTSKLKLHLSNINis-----sSGFKILAKFAISPSAairkpVIEFRIR 760  fission yeast
XP_002838922  686 TAGIEGt--------pATTCQSKP--AGTFSRERGRLVWKLGDVLidpaagdeGAKKLVARFQTEGQAra--tPVDMRWE 753  Tuber melanos...
Q6BT63        913 SVALDSsc-------eTINASSRP--QGSFNKDKNRITWRYTQPLnls--tnnLEEKLIARFATNGVGsehesGIQVKFS 981  Debaryomyces ...
Feature 1                                                                                        
3G9H_A        276 ISetdnvalphsgagSGITLTCQEldennpf---------------------------ggewldVNTKRTLTTGNYHGL 327  baker's yeast
XP_451272     269 FTa------------SQLLTQVNVeygysp-----------------------------trltdLPLNVMTISGNYKAQ 306  Kluyveromyces ...
Q7RZ47        809 YTappa-----gevgSGISVSRLVegkgkekaeeqseeedpfa--ddkgpispalgkdgrtwaeVPLSRKLIGGKYEAK 880  Neurospora crassa
XP_504872     972 LTss----------lTEGVFEWSDggd----------------------------------wqpVGHLKSFLSGKFNSH 1006 Yarrowia lipol...
XP_001545626  759 VQrpi--------sgNGISISRLEavkgaeesdpfad---------------eslaptagnwveIETSRKIANGVYEAR 814  Botryotinia fu...
Q0UZZ0        810 ISgdqt-----ltlgSGLGVSMSAplnetkqdgeadpfad--------idenappaspatgwkpVATVKRITSGTYLGV 875  Phaeosphaeria ...
Q2UCN4        335 VHtld--------agSRLGISAASpteeitpkgsdpfade--------dsgapddaqpsltwkeVPTTRKLVGARRTVP 397  Aspergillus or...
NP_596299     761 MVdssnn---pgltkLFLKPDMFDttsssggsq----------------------lesayeetkVPTSYGIHVRECSVF 814  fission yeast
XP_002838922  754 ISgeda-----ntagSGLTLSSFEkpekpetaaaaeaeevdpfadeggeaksvagadeegvwkaVNTIRKVMGGKYVAV 827  Tuber melanosp...
Q6BT63        982 IHdpp--------hqSNILNYRNEp---------------------------------------IPCVKNLITGSYSSH 1013 Debaryomyces h...

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