Conserved Protein Domain Family
BRO1_HD-PTP_like

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cd09239: BRO1_HD-PTP_like 
Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains
This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of HD-PTP. The Bro1-like domain of HD-PTP can also bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. HD-PTP, and some other members of the BRO1_Alix_like superfamily including Alix, also have a V-shaped (V) domain. In the case of Alix, the V-domain contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the V-domain superfamily. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This family also contains Drosophila Myopic which promotes epidermal growth factor receptor (EGFR) signaling, and Caenorhabditis elegans (enhancer of glp-1) EGO-2 which promotes Notch signaling.
Statistics
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PSSM-Id: 185762
Aligned: 9 rows
Threshold Bit Score: 552.804
Created: 27-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative ESCRT-III binding site
Evidence:
  • Comment:based on mutagenesis of Saccharomyces cerevisiae Bro1
  • Comment:a surface patch that comprises at least part of the Snf7 binding site of Bro1
  • Comment:binds the Snf7/CHMP4 components of ESCRT-III; CHMP4 proteins are mammalian homologs of yeast Snf7

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
Q9H3S7          2 EAVPRMPMIWLDLKEAGDFH-------FQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVprDFEGCSVLRKYLGQ 74   human
ABN54457        2 EALPIMPMLAPQSRSSTLSYdnipnfdFRLRMKEYILLTFNADPHDYDSAFDELTQMKFEANVPtpSVEQTLKLKRYYGQ 81   Caenorhabditi...
EEB11807        2 EAIPRLPMLSFELRSSTEKVd------FSTKIKQYIINHYNEDPVLYASAITSIDSLRKEAITPgkSISSCSTMKRYYCQ 75   human body louse
NP_648722       2 EAVPRLHMLWFALKSSPEGT-------SFAALKKYIAEFYHEDPEAYSKEVHALETLRNQAMHT--TKDGAPVMKRYYCQ 72   fruit fly
CAK11311        2 EAVPRMPMIWLELKEAGDFE-------FSPTVRQYIEINYGENPENYSEALKRLEQLRQSVVNIprDFEGCNTLRKYCGQ 74   zebrafish
XP_002578759    2 DGLPRLPAVGLPMKKSEFVP-------DLQPLKKYIEVQYQQSSSLFEKEFNSFLSLRKYACEPsvDYTGLSQLKRYYAQ 74   Schistosoma m...
AAI67712       18 EAVPRMPMIWLDLKEPGEFA-------FQPAVKQFVLKNYGENPENYNEELKKLDQLRQSAVNVprDFEGCSVLRKYFGQ 90   western clawe...
XP_002434254    2 ESAPHLPMLSCQLKSSPTNTd------FGPALKKYIAEHYHEDPDSYTNELKDLEALRLAACNAprTFTGCSTLKRYYSQ 75   black-legged ...
BAA95995       40 EAVPRMPMIWLDLKEAGDFH-------FQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVprDFEGCSVLRKYLGQ 112  human
Feature 1                                                                 #  #            #  ##   
Q9H3S7         75 LHYLQSRVpmgsgqeAAVPVTWTEIFs-----GKSVAHEd-IKYEQACILYNLGALHSMLGAMDKRvseEGMKVSCTHFQ 148  human
ABN54457       82 LCMMQKRFpmgageqLETPFAWHDGLidirsaQSEVTICd-IEFEKASVMFNIGACHAQYAAEQTRdtqDCIKAAFMHFQ 160  Caenorhabditi...
EEB11807       76 LHLMASRFpmkehepAAVSFSWKSLHs-----NSKITMNd-ISLEMASILYNIGALHSQLGASDNRtsaEGMKMSCTHFQ 149  human body louse
NP_648722      73 LHALQNRFpql-adrGIFTFKWKDLY------HSAVHEVtdLRFERAAVLFNIAALHTQSGASVTRgdvDGMKMACTHFQ 145  fruit fly
CAK11311       75 LHFLQSRVpmatgqeAALPVTWTDIFt-----GRNITHEd-INYEHACVLYNLGALHSLLGAVDNRlseEGMKVSCTHFQ 148  zebrafish
XP_002578759   75 LQLLKGRFhfsaatcTDVTWKWQDIF------SDCLLESsdIRFEEASVMYNIAALHSILGVKEKRadaDSMKIACTHFQ 148  Schistosoma m...
AAI67712       91 LHYLQSRIpmgseqeASVPVTWTEIFs-----GKTVTHEd-IKYEQACVLYNLGALHSMLGAMDKRvseEGMKVSCTHFQ 164  western clawe...
XP_002434254   76 LLCLQTRFpmtdegpACVPFMWTDIY------SGMVFNImdIKYEEASIMYNVGALHSQLGTLQNRdnsEGMKIACTHFQ 149  black-legged ...
BAA95995      113 LHYLQSRVpmgsgqeAAVPVTWTEIFs-----GKSVAHEd-IKYEQACILYNLGALHSMLGAMDKRvseEGMKVSCTHFQ 186  human
Feature 1                                                    #  ##        #  ##                   
Q9H3S7        149 CAAGAFAYLREHFPqaysv---dmsrQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALenpd 225  human
ABN54457      161 YAAYAFEQLNSFRNsdifypsvdldaNVISFYYKVMIAQAQECLVQKSLLDNRSAIVIAKLSLWLQEAYDSAAKIVdews 240  Caenorhabditi...
EEB11807      150 CAAWAFQHINEEYSlvsra--iglspVLMSFLCHLCLAQAQECILEKSIMDNRKSAITAKVGIQVVDYYKQSLGLLtewp 227  human body louse
NP_648722     146 AAAWAYGELRERYAnvnggg-dfmtpELLVFQQQVCFAQAQECILEKSLIDNRKPHIVAKVTAQIVVYYGAALAALltgg 224  fruit fly
CAK11311      149 CSAGAFAYLRDHYShsyss---dmssQALSINISLMLAQAQECLLEKTLLDNRKSHLIAKICAQVCDYYKDCLRVLense 225  zebrafish
XP_002578759  149 CASWALNTLVERHLpvsga--tdltsELMLLFGSLMLAQAQECVVEKSILDNRPANVTAKLSQYIMEVYENVGAQLlgfe 226  Schistosoma m...
AAI67712      165 CAAGAFAYLRDHFAhsysv---dmshQILNLNINLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALense 241  western clawe...
XP_002434254  150 CAAWALQQVRGLYPqpkgs---dmshDLLLFFSTVFLGQAQECILEKSTLDGRKSSITAKVAAQVVEYCKTALLVSgsms 226  black-legged ...
BAA95995      187 CAAGAFAYLREHFPqaysv---dmsrQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALenpd 263  human
Feature 1                                                                                         
Q9H3S7        226 tas------llgriqKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQK--------------FGERVAYFQSALDKLNEAIK 285  human
ABN54457      241 vn-------ipesvqRYYAKICSLKSAMYAVIAYMSFGDNLEKEDKk-------------MGWRLQYYNIANKYMELLSS 300  Caenorhabditi...
EEB11807      228 lsedspseitnlkiyKNWNKYVLFKIAYYESISLLFQGQQSEDQQK--------------MGERVTFYQAAFGKLEEARK 293  human body louse
NP_648722     225 ddgpv-aqvidssvyKLWKKYVRFKINYLTCILYLYQGQHSEEKRQ--------------MGERVTLYQASWDKLEEARK 289  fruit fly
CAK11311      226 cv--------pgriqKEWRKLINMKISYFSAITHLHMGKQSEEQQKygeavsvclcafsaLFDLVAYFQFSLDKLNEAIK 297  zebrafish
XP_002578759  227 sndk----ivlpkysKEWRRRCQIKTSFYSSLTAYYAGINEEENKV--------------YGKAIAWFKLANNRMEDCKT 288  Schistosoma m...
AAI67712      242 tas------llgkiqKDWKKLVQMKIYYFASIAHLHMAKQAEEQQK--------------YGEQVAYLQSALDKLNEAIK 301  western clawe...
XP_002434254  227 setgsiqdivgskllKMWRRTLDLKVAYYTSLSCYHMGNQAEETQR--------------MGERQAWYQLAVHRLSEAIA 292  black-legged ...
BAA95995      264 tas------llgriqKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQK--------------FGERVAYFQSALDKLNEAIK 323  human
Feature 1                                                                          # # # #        
Q9H3S7        286 LAKgqpdtv-----------qdalrFTMDVIGGKYNSAKKDNDFIYHEAVPA----LDTLQPVKGAPLVKPLPVNPT--D 348  human
ABN54457      301 NHSkmreryp--------elfvtssFLFDVISAKQRNAEKENDFIYHDRVPKqedaIDAVQKDGGGAMCKVKTLSFDplD 372  Caenorhabditi...
EEB11807      294 LYSgmdnten---------vvealnFLQDVIEAKRKVAKSENEFIYHETVPN----LSHLPIIKGASLVKGIPFSIN--D 358  human body louse
NP_648722     290 ESKglpdqre---------ineslsFTADVVEAKRKNAKNENEFIYHEAVPE----LSTIAAVQGANLVNGIGFQVS--D 354  fruit fly
CAK11311      298 QSKgqpeti-----------qealkFTMDVIGGKYNSAKKDNDFIYHESVPS----LDTLGAVKGASLVKPLPVSLT--D 360  zebrafish
XP_002578759  289 NAKnfkdsdnssmmtsggtyrasatYAGELISNKLTSSTKDNDFIYHELIPK----IESLEQIKGVCIVKGVPFDHN--D 362  Schistosoma m...
AAI67712      302 QSKgqpatv-----------qealrFTMDVIGGKFNSAKKDNDFIYHESVPA----LDTLQAVKGAPLVKALPVNPT--D 364  western clawe...
XP_002434254  293 VAKgiedeq----------ldetlaFAMDVIGGKHQAAKKENEFVYHDKVPP----LDTLPEVKGANLVKGIGFCPT--D 356  black-legged ...
BAA95995      324 LAKgqpdtv-----------qdalrFTMDVIGGKYNSAKKDNDFIYHEAVPA----LDTLQPVKGAPLVKPLPVNPT--D 386  human
Feature 1                  
Q9H3S7        349 PAVTGPDIF 357  human
ABN54457      373 PSVCGCDLF 381  Caenorhabditis elegans
EEB11807      359 PEVCGPDLF 367  human body louse
NP_648722     355 EEHAGPDIF 363  fruit fly
CAK11311      361 QSVTGPDLF 369  zebrafish
XP_002578759  363 IEVRGPDIF 371  Schistosoma mansoni
AAI67712      365 PAVTGPDIF 373  western clawed frog
XP_002434254  357 PEICGADIF 365  black-legged tick
BAA95995      387 PAVTGPDIF 395  human

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