1XK5,3GJX


Conserved Protein Domain Family
Snurportin-1_C

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cd09232: Snurportin-1_C 
Click on image for an interactive view with Cn3D
C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Statistics
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PSSM-Id: 185717
Aligned: 36 rows
Threshold Bit Score: 163.192
Created: 22-Jul-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
m3G-cap bindingexportin 1
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:m3G-cap binding site
Evidence:
  • Structure:1XK5; Human m3G cap-binding domain of snurportin 1 with bound m3Gpppg-cap dinucleotide, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ####                         ###                      #                  
1XK5_A         1 HYANQLMLSEWLIDVPsdl------gqEWIVVVCPVGKRALIVASR--------GSTSAYTKSGYCv--NRFSSLLPGgn 64  human
EFI94034     136 MYAELLEMSEDMPWDSdgipa-dietgWVAVAPVPVGKRCLVVTSMpsgtnatvPNTTLRSRLLGKsliPPFPSPLPH-- 212 Schizophyllum c...
XP_640046    165 LYSNHLMLAEGMVHIPitl------erEWYCVPVPLGYRCLVISQN--------DWTIVRSAENGQv-lKRFKSLLPFgs 229 Dictyostelium d...
EFA76704     158 HYSNHLMLAESMTDIPmyf------sdEWFAVPVSQGKRCLVISQR--------EITVARSPDGHVm--STFHSTLPFgs 221 Polysphondylium...
XP_002767314 123 FWANQLMYPDWLVEVPedl------stLWLVKIRPEGKHCLLIIHA--------GTATLRSKNGRY---YWSYYVGPEfa 185 Perkinsus marin...
XP_001033329 150 EIQSLMVQPQYMIEIPddi------gpNYFVMPRPTGKRCLVITQN--------QFTTSRDKNGILi--HNFQSILPGgs 213 Tetrahymena the...
XP_001447552  65 KFCKNFQSFEYYNGESic-------inEYFIRILPVGQRCIVSSHQ--------GVTVLKTINGLK---YKFSSSLPGgs 126 Paramecium tetr...
XP_766663     95 GISEILVFPEFITCLDslineeinqirGSMFFVRPEGSRVLIHINN--------HTASVHNKQNYVk--HVFSTDIKG-- 162 Theileria parva...
XP_668670     79 VWSKELIEYTWLSKLSegyksiqenpqDWLLLPICTGSRSMLIQGN--------GYCELRNQDGWR---IFTVKNVPFah 147 Cryptosporidium...
XP_002141644 106 VKYNYLTLFTWDTFIKnyt------pgEWLVTPITIGIRCILIYGN--------GYCEIRDEHGWT---IFVIDIPPFkh 168 Cryptosporidium...
Feature 1                                                                                        
1XK5_A        65 rrn-----stakdYTILDCIYNev------------------nQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEeeg 121 human
EFI94034     213 -------------ATVLDCILDdhw---------------rdnGILHVLDVLKWKGRDMMECETAFRFWWRDMRLAElpp 264 Schizophyllum c...
XP_640046    230 eesre-scppqnqHCILDCIFQdt------------------eNTFYILDILSWKGYILYDCDTEFRFFWRDSKLLEskl 290 Dictyostelium d...
EFA76704     222 pasrestgnvanrYCILDCLYEpf------------------kSVYYILDILCWKGNMLCDCDTEFRFFWKQTKLAEtta 283 Polysphondylium...
XP_002767314 186 g----------mgLTVLDVVYPdttp--------------gfrRAIFVMDVIIWNHSELTSADAECRHYWLKSRLEDmnt 241 Perkinsus marin...
XP_001033329 214 klg-----ekskfYSILDCIFNee------------------qQTYYIMDVIIYKDLNMAENSTDMRFFWIQQKFSQnef 270 Tetrahymena the...
XP_001447552 127 qk-------tligRCILDCFLSa--------------------NTVYIYDILQWGKMDMSEQVAELRYFWIKGHILSqlr 179 Paramecium tetr...
XP_766663    163 -------------PTILDCVIPtpfvsklpnimdknadnpdvtIVYYVIDILMLNGHILTTSDLECRLFFLASILDElnt 229 Theileria parva...
XP_668670    148 -----------tgLTIIDGIYNqd------------------qNTFYCNDLIVWNNLNICISTTECRLHFLSSRIEEsgv 198 Cryptosporidium...
XP_002141644 169 -----------sgLTILDGIYNyi------------------iDTFICYDVIEWNNLKICDSSTDCRLYFLRSRFQEvgl 219 Cryptosporidium...
Feature 1                                                                                        
1XK5_A       122 lge-----------------------------------ktklnpFKFVGLKNFPCTpeSLCDVLSMdf------------ 154 human
EFI94034     265 svtvsg------------------------------tihrfaypVLFVPIPYHTDT--TIPNLLNLvlplaraarqvevp 312 Schizophyllum c...
XP_640046    291 hqgqqtkqkenq------------------iekenenenqeekeVTFLSIPYFSSKvdSLEQIKFDyllkrnna------ 346 Dictyostelium d...
EFA76704     284 str------------------------------------snynpHPFISLPSYGCDleSLDQLNQLriqshqtpept--- 324 Polysphondylium...
XP_002767314 242 rredlfggdssm------------------mgidasgddddtmlPDLVYVPAFDATpeVIASLYNGdhd----------- 292 Perkinsus marin...
XP_001033329 271 qdi------------------------------------sdcnqFKFKIVPKQICTrsSFKEVYQCkf------------ 302 Tetrahymena the...
XP_001447552 180 qd-------------------------------------qeqqdYNFEWIPVIPSIa-ELQKTLFP-------------- 207 Paramecium tetr...
XP_766663    230 -----------------------------------------dskILFQFVKYSEVNfdQLNSAYQSiink---------- 258 Theileria parva...
XP_668670    199 tnriaesmdv---------------------smvldsslkfipnIRIQLGKYFPLSkdSLLHIYGVndrthgslsdfd-- 255 Cryptosporidium...
XP_002141644 220 ddynnrieienedilidirndlshikyyypykhldnwnkrhknsIKIQMANYFEITkqVISSLYLGsinaie-------- 291 Cryptosporidium...
Feature 1                                    #  #                 #    
1XK5_A       155 ------------------------pFEVDGLLFYHKQTHYSPGSTPLVGWLRPY 184 human
EFI94034     313 piqhvevlaaavracpypngaalasVEPDGLLLYVAEAMYEQGTSPLASWVPIR 366 Schizophyllum commune H4-8
XP_640046    347 -----------------ntdkqilqYKTEFLLFYHKSSHYEFGTTPLFCSLAIE 383 Dictyostelium discoideum AX4
EFA76704     325 --------------tttttpindkqYPIEFILFYHKESHYDFGSTPLLLSLSSH 364 Polysphondylium pallidum PN500
XP_002767314 293 ----------------------gidYQPDSLIFMHKQGLYWQGLTPLVLCYRDE 324 Perkinsus marinus ATCC 50983
XP_001033329 303 ------------------------dFQKDGILFIHKDTDYKGGIHPNFLFWKDT 332 Tetrahymena thermophila
XP_001447552 208 -------------------------YTKNGLLFIRKDSYYYAGVNPECFIYQDE 236 Paramecium tetraurelia strain d4-2
XP_766663    259 ----------------------efdYETDSIIFVNKNSTYVGGYNPNWLCYKDY 290 Theileria parva strain Muguga
XP_668670    256 -------------clvfvrkdsvydVEQDYEDAYPECKEYCTVSQKNWFIWRDK 296 Cryptosporidium hominis TU502
XP_002141644 292 --------------------nndmnKLLSFFAFVHRDSCYTYDYSCYWYIWRDY 325 Cryptosporidium muris RN66

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