2PRC,1EYS


Conserved Protein Domain Family
CytoC_RC

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cd09224: CytoC_RC 
Click on image for an interactive view with Cn3D
Cytochrome C subunit of the bacterial photosynthetic reaction center
Photosynthesis in purple bacteria is dependent on light-induced electron transfer in the reaction center (RC), coupled to the uptake of protons from the cytoplasm. The RC contains a cytochrome molecule which re-reduces the oxidized electron donor. The electron transfer reactions of photosynthesis are performed by the following three components: the photosynthetic reaction center (RC), the cytochrome, and the soluble electron carrier protein. Firstly, the RC promotes the light-induced charge separation across the plasma membrane, which results in the oxidation of a pair of light-harvesting complexes, LH1 and LH2, and the reduction of quinone to quinol. The quinol then leaves the RC and moves to the cytochrome complex through the quinone pool of the plasma membrane. Secondly, the cytochrome complex reoxidizes the quinol to quinone, and the released electrons are transferred to soluble electron carriers. Third, the soluble electron carriers transport the electrons to the RC through the periplasmic space. Finally, the photo-oxidized light-harvesting complex is reduced by the soluble electron carriers, and the RC comes back to the initial state. In the course of the oxidation and reduction of the quinones, a transmembrane electrochemical gradient of protons is formed, and its energy is used to produce ATP by the ATP synthase complex.
Statistics
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PSSM-Id: 198423
Aligned: 24 rows
Threshold Bit Score: 291.158
Created: 16-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Heme bindingsubunit
Conserved site includes 79 residues -Click on image for an interactive view with Cn3D
Feature 1:Heme binding sites [chemical binding site]
Evidence:
  • Structure:2PRC: Blastochloris viridis c-type cytochrome binds four hemes, contacts at 4 A
  • Comment:The cytochrome contains four conserved heme-binding motifs CXXCH

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                          #######       
2PRC_C         3 EPPPATTTQTGf-RGLSMGEVLHp----aTVKAKKERDAQyp-paLAAVKAEGPPVSQV-------YKNVKVLGNLTeAE 69  Blastochloris v...
YP_001770520  25 THPPVRSEQVGy-RGTGMVQVTNpr---tQAALLAANTVPt---pQDPAPPGGEPATQT-------YQNVQVLTDLTtDQ 90  Methylobacteriu...
AAB67248      26 LPIGIETEQTGy-RGLGMEQVTKrh---lEAMKRSGMEIPe---pERPAAAAGPRAGDI-------YENVKVLGDLNiSE 91  Ectothiorhodosp...
AAP70703      45 MGPAGTYTQSGy-RGLMMGEVDMade-laDDMAAPKNQVPa---aSERFPDEGPLAGEV-------YVNVPVLAHLSaDN 112 Roseospirillum ...
YP_001003169  27 ERPPVDSEQKGy-RGTGMEEVTNp-----RLRDDDLHLAPe---aADPVSAEGPKAGEI-------YQNVEVLTDLSvAE 90  Halorhodospira ...
Q0FYS8        38 VIPPIEAIETGp-AAIEMVQFKDg----nRQPDYLLPEAP-----PPAEPYEGELKASEa------YENVEVLGDLTeGE 101 Fulvimarina pel...
ZP_06861646   37 PWDTIESREWGw-RGIAMNTFTSe-----RTRSDPLNLVPa---sIEPFEARGVSAGEA-------YENVQVLGDLDaAQ 100 Citromicrobium ...
CAA58310      42 NPAQTASMQTGp-RGTGMHVAEFnvtrfaPDPTIEEYYTE-----APYIPEGGEELAKDi------YENVQVLGDLTdDN 109 Roseobacter den...
Q8GR75        43 PTLQTTDFQTGp-RGIGMAVSKFv----kDNPQDDPYAAQyvayeRVEVPVGTPTAAEAy------GDSVVAFGDMDqAN 111 Rhodovulum robi...
YP_001635690  40 GRAQREAAQTAgaRWSPSDGIKVi----tSSPPVTPTDGRqn-wmGTQAWNEGVQAGQAwiqqypnTVNVQVLIGMSsAQ 114 Chloroflexus au...
Feature 1        #   #  ##  #     # ###       ##    ### ### ## ##         ##     #####  ##   ### 
2PRC_C        70 FLRTMTAITEWVspqeGCTYCHDe---nNLASEAKYPYVVARRMLEMTRAINTNWTQHVa---QTGVTCYTCHRGTPLPP 143 Blastochloris v...
YP_001770520  91 FNRVMVSITEWVspeqGCAYCHNv---eNMADDSVYAKTVARAMLRMTRHVNADWKNHVg---TTGVTCYTCHRGNPVPA 164 Methylobacteriu...
AAB67248      92 FNRLMNAITAWVapeeGCNYCHTp---gNFADENVYTKIVSRRMLEMTYTINQEWTAHVg---ETGVTCYTCHMGNPVPE 165 Ectothiorhodosp...
AAP70703     113 FNRLMVAITEWVspeeGCNYCHDp---dDLTAERPYTKIVSRRMLEMVMYLNSQWGDHVa---PSGVTCWTCHRGNPVPE 186 Roseospirillum ...
YP_001003169  91 FTRLMQSMTDWVapdeGCTYCHDg---nDFASEELYTYQVSRQMIEMNRYVNANWESHMd---DTGVTCYTCHRGENLPE 164 Halorhodospira ...
Q0FYS8       102 FTRLMLAITEWVspeqGCEYCHNve--eGFASDSVYTKIVARNMLQMTRNINTNWPEHVa---PAGVTCYTCHRGQNVPA 176 Fulvimarina pel...
ZP_06861646  101 FDHLMLSITEWVapeeGCAYCHNpd--aSFAADDMYTKKVARRMLTMVRDINANSRHVG----DVGVTCYTCHRGQGVPP 174 Citromicrobium ...
CAA58310     110 FNRVMTAMTQWIapeeGCVYCHGegdleTYGEDNLYTKVVARRMIQMTQNINENWDGHVnanaEVGVNCYTCHRGEHVPS 189 Roseobacter den...
Q8GR75       112 FDQLTKAMSEWT----GADIVLY-----DNGEVDANMLEVTQNCIELTQYLNTDWDGHNlasdGRGVNCYTCHRGEPIPP 182 Rhodovulum robi...
YP_001635690 115 IWTYMQQYVSGAlg-vGCQYCHNi---nNFASDEYPQKIAARNMLRLVRDVNAEFIVNLpnwqGNYVQCATCHNNAPNNL 190 Chloroflexus au...
Feature 1         #                                                           ####               
2PRC_C       144 YVRYLEptlplnnretpthverve-trsgyvvrlakytaysaLNYDPFTMFLANd---kRQVRVVPQTALPlvgvsrgkE 219 Blastochloris v...
YP_001770520 165 NVWHNNpgpahalgfaardn---------gqnhpslaaglasLPYDPFKDLLGDkgidnGAIRVAATTALPv------sP 229 Methylobacteriu...
AAB67248     166 NIWYEDpgfkqagafaasrm---------grtwsgtnvasasLPNDVFTPFLQGde--pKNIRVTPRPRCRwv-----tI 229 Ectothiorhodosp...
AAP70703     187 NIWFKNddadggsgalgntf---------gqnaaswdaglsaLPNDVMEAYLLDd----QNLRITPTNDLPmn----gvT 249 Roseospirillum ...
YP_001003169 165 ESWFAEpeldfnvhglgndq---------mqnlasekvgftsLPRNVFERYLLGh----DDLRVEGDTILPnl----deW 227 Halorhodospira ...
Q0FYS8       177 QSWYDQeepdgsqflgkpr-----------pwyleaktirqfFPSVPYAAYLQEd---pAPGNIQSQDPLVsdt--geaE 240 Fulvimarina pel...
ZP_06861646  175 RHWFKAvapkppmggivgkp---------ppwnrtaktmrdfFPRAAFENYLLDd----QQIMGAQARSVSg-------E 234 Citromicrobium ...
CAA58310     190 EIWFNItpvteatagwasv-----------qnratplsqstsLPSNALEIYLTEy----EAGNVHDLESRVagvp-ndvE 253 Roseobacter den...
Q8GR75       183 QSWFKAgavnasatgwaaiqn------rvmldnkytqseftsLPVDAVEKFLLDg----ESIKVHDLESRVnt----lpG 248 Rhodovulum robi...
YP_001635690 191 EGFGAQfinsvppikvtvdpldangmaildpaqkpeairepvLLKDAILFYIYNyq-vwKPFDPNDPESGRgslaltydG 269 Chloroflexus au...
Feature 1                 ##  ## ##  # ### ###    ##         ## ### #####              #         
2PRC_C       220 RRPLSDAYATFALMMSISDSLGTNCTFCHNAQTFESWgk-kSTPQRAIAWWGIRMVRDLNMNYLAPLNASLpasr----- 293 Blastochloris v...
YP_001770520 230 GKPIMTTEKTYSLMIHMSEGLGVNCTYCHNSRAFSNWg--eSTPKRVTAWHGIRMVRDINGSYIEPLAPALpqvr----- 302 Methylobacteriu...
AAB67248     230 RTTWWTSEWVHGLMIHFSVALGANCTTCHNTNNFPEWq--tSPPQRVTAWHGIEMVRALNNQYLNPLQPEYpdyr----- 302 Ectothiorhodosp...
AAP70703     250 QIGTKQAEWTYGMMFHISKGLGVNCTYCHNSQSFRVWe--mSPPARVTAWHGIQMTRAINVDFLDPLQPEYpanr----- 322 Roseospirillum ...
YP_001003169 228 DVSLQDTEASYGLMMHMSDATGSNCTTCHNTGRLGQWd--eSPVEREISWHGIRMTRDINANWMEPLEAGQpdvr----- 300 Halorhodospira ...
Q0FYS8       241 VALEQTAENLYLFMMQQSNALGVNCTYCHNSRAFYDWs--qSTPFRWIGYWGIRMAREINVNYIQPLTDVFpper----- 313 Fulvimarina pel...
ZP_06861646  235 VTDLADLENIYILMMQMSDGLGVNCNFCHNSRAFADWs--qSTPKRITAWYGIRMTRGINRDYLVQMHDLFpadr----- 307 Citromicrobium ...
CAA58310     254 VASIQKTEMTFSLMNYFSNSLGVNCVFCHNSRAFYDPg--qHTPQWATALLGRQMVIEMNQEYLIPLEDEYpedr----- 326 Roseobacter den...
Q8GR75       249 DPTWQNAERTFSLMNHQSNSLDVGCVYCHNTRAFYDGt--qVTPQWSSTITAQQMLSNINQYYLEPRAELLpass----- 321 Rhodovulum robi...
YP_001635690 270 GRTQDQVTINQNVMNYQAWSLGVGCTFCHNSRNFVAYelnpAGDNVLNPLYAYNKLKAQRMLLLTTWLAENwprygaiak 349 Chloroflexus au...
Feature 1                                #  ##  ##   ###   
2PRC_C       294 -----------------lgrQGEAPQADCRTCHQGVTKPLFG 318 Blastochloris viridis
YP_001770520 303 -----------------lgpEGDPPKANCTTCHQGLAKPLNG 327 Methylobacterium sp. 4-46
AAB67248     303 -----------------lgpTGDAPKTNCATCHNGLQLPLDR 327 Ectothiorhodospira shaposhnikovii
AAP70703     323 -----------------lgpEGDAPKANCATCHQGAFKPMYG 347 Roseospirillum parvum
YP_001003169 301 -----------------lgpTGDIAKVQCATCHYGEQLPLDG 325 Halorhodospira halophila SL1
Q0FYS8       314 -----------------lgpLGDPAKVHCGTCHRGETKPLQG 338 Fulvimarina pelagi HTCC2506
ZP_06861646  308 -----------------lgpLGDVAKVDCGTCHNGMSRPLGG 332 Citromicrobium bathyomarinum JL354
CAA58310     327 ----------------lgpvYADAPKAACKTCHKGYQNRCKA 352 Roseobacter denitrificans OCh 114
Q8GR75       322 -----------------lgdEGDAGKANCATCHMGVVSPLNG 346 Rhodovulum robiginosum
YP_001635690 350 peiptgsgaasrysyqrlgdGQIYNVPGCYTCHQGNNIPLAS 391 Chloroflexus aurantiacus J-10-fl

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