3D38,3A0B,3A0B,2RCR,1K6L


Conserved Protein Domain Family
Photo_RC

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cd09223: Photo_RC 
Click on image for an interactive view with Cn3D
D1, D2 subunits of photosystem II (PSII); M, L subunits of bacterial photosynthetic reaction center
This protein superfamily contains the D1, D2 subunits of the photosystem II (PS II) and the M, L subunits of the bacterial photosynthetic reaction center (RC). These four proteins are highly homologous and share a common fold. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Bacterial photosynthetic reaction center (RC) complex is found in photosynthetic bacteria, such as purple bacteria and other proteobacteria species. It couples light-induced electron transfer to proton pumping across the membrane by reactions of a quinone molecule (QB) that binds two electrons and two protons at the active site. Protons are translocated from the bacterial cytoplasm to the periplasmic space, generating an electrochemical gradient of protons (the protonmotive force) that can be used to power reactions such as the synthesis of ATP.
Statistics
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PSSM-Id: 187745
Aligned: 5 rows
Threshold Bit Score: 202.683
Created: 16-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:chlorophyll binding site
Evidence:
  • Structure:3A0B_A; Thermosynechococcus vulcanus PSII binds chlorophyll A, defined using 4.0 A contacts.
  • Structure:2RCR_L; Rhodobacter sphaeroides reaction center binds bacteriochlorophyll A, defined using 4.0 A contacts.
  • Citation:PMID 2036404
  • Structure:1K6L_M; Rhodobacter sphaeroides reaction center binds bacteriochlorophyll A, defined using 4.0 A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
3D38_L     30 FVGFFGVSAIFFIFLGVSLIGYAasqgptwdpfaisin---------------------------ppdlkyglgaaplle 82  Blastochloris viridis
3A0B_D     17 FVGWSGILLFPCAYLALGGWLTGttfvtswythglassylegcnfltvavs-tpansmghsllllwgpeaqgdftrwcql 95  Thermosynechococcu...
3A0B_A     29 YVGWFGVIMIPTLLAATICFVIAfiaappvdidgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlyn 108 Thermosynechococcu...
2RCR_L     30 YVGFFGVATFFFAALGIILIAWSavlqgtwnpqlisvy---------------------------ppaleyglggaplak 82  Rhodobacter sphaer...
1K6L_M     51 YLGSLGVLSLFSGLMWFFTIGIWfwyqagwnpavflrdlfff-------------------sleppapeyglsfaaplke 111 Rhodobacter sphaer...
Feature 1               #   #                          #  ##  #                     ##  ## #  
3D38_L     83 GGFWQAITVCALGAFISWMLREVEISRKLGigwHVPLAFCVPIFMFCVLQVFRPLllgswghafpygilSHLDWVNNFgy 162 Blastochloris viridis
3A0B_D     96 GGLWTFIALHGAFGLIGFMLRQFEIARLVGvrpYNAIAFSAPIAVFVSVFLIYPLgqsswffapsfgvaAIFRFLLFFqg 175 Thermosynechococcu...
3A0B_A    109 GGPYQLIIFHFLLGASCYMGRQWELSYRLGmrpWICVAYSAPLASAFAVFLIYPIgqgsfsdgmplgisGTFNFMIVFqa 188 Thermosynechococcu...
2RCR_L     83 GGLWQIITICATGAFVSWALREVEICRKLGigyHIPFAFAFAILAYLTLVLFRPVmmgawgyafpygiwTHLDWVSNTgy 162 Rhodobacter sphaer...
1K6L_M    112 GGLWLIASFFMFVAVWSWWGRTYLRAQALGmgkHTAWAFLSAIWLWMVLGFIRPIlmgswseavpygifSHLDWTNNFsl 191 Rhodobacter sphaer...
Feature 1               ## ### ###  #                                                         
3D38_L    163 qylnwhynPGHMSSVSFLFVNAMALGLHGGLILSvanpgd---------------gdkvktAEHENQYFRDVVGYSIga- 226 Blastochloris viridis
3A0B_D    176 fhn-wtlnPFHMMGVAGVLGGALLCAIHGATVENtlfqdgegastfr--afnptqaeetysMVTANRFWSQIFGIAFsn- 251 Thermosynechococcu...
3A0B_A    189 ehn-ilmhPFHQLGVAGVFGGALFCAMHGSLVTSslirettetesanygykfgqeeetyniVAAHGYFGRLIFQYASfnn 267 Thermosynechococcu...
2RCR_L    163 tygnfhynPAHMIAISFFFTNALALALHGALVLSaanpek---------------gkemrtPDHEDTFFRDLVGYSIgt- 226 Rhodobacter sphaer...
1K6L_M    192 vhgnlfynPFHGLSIAFLYGSALLFAMHGATILAvsrfggerel--------eqiadrgtaAERAALFWRWTMGFNAtm- 262 Rhodobacter sphaer...
Feature 1                    #  #   #   
3D38_L    227 -lSIHRLGLFLASNIFLTGAFGTIAS 251 Blastochloris viridis
3A0B_D    252 krWLHFFMLFVPVTGLWMSAIGVVGL 277 Thermosynechococcus vulcanus
3A0B_A    268 srSLHFFLAAWRVVGVWFAALGISTM 293 Thermosynechococcus vulcanus
2RCR_L    227 -lGIHRLGLLLSLSAVFFSALCMIIT 251 Rhodobacter sphaeroides
1K6L_M    263 -eGIHRWAIWMAVLVTLTGGIGILLS 287 Rhodobacter sphaeroides

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