Conserved Protein Domain Family
PLDc_N_DEXD_b2

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cd09204: PLDc_N_DEXD_b2 
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Statistics
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PSSM-Id: 197298
Aligned: 41 rows
Threshold Bit Score: 181.203
Created: 14-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic siteputative
Feature 1:putative active site [active site]
Evidence:
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_373013     38 EKVLSTIIDELqkCETFYFSVAFITESGLASLKAQLLDLsnkgvKGKILTSNYLGFNSPKMYGELLKLkNVEVRLTdi-- 115  Staphylococcus...
ZP_04776340   14 KKVLSTLESELemCDEFIFSVAFISESGLTSLLQTLKNLeekniRGKILTTNYLYFNTPKVLEKLSNFkNISLKIYdcve 93   Gemella haemol...
ZP_02865887   42 GNLLGELKESLreCKSFYFSVAFINFSGLQLLLDSFRELeergvKGKIITSTYLNFTEPKALEKVKSFeNIDLKIFvad- 120  Clostridium pe...
ACV22179      43 EKMLSHVLSELsaCDEFEISVAFIRTSGLILLANVLDELeergvRGRVLTGTYLTFNEPDAFRRLLNYeNIETRVYn--- 119  Slackia heliot...
ADH98263      14 ANMLNELIDSMktCNSFYFSVAFVNFSGLQLLLDPLKEAqdrgiKGRILTSTYLNFTDPKALQKMKEFdHLDLKVFvtd- 92   Bacillus selen...
ACZ25233      23 RNVLSAIEDGLrnCDEFLISVAFITPEGLLTLKPILKELeergvRGRVLTTDYLGFNSPQVLEDLGNLnNIELKVYcttq 102  Veillonella pa...
ZP_01220543   24 DNFFNELRGSFhgCKRFYINVAFVSYSGLQILLDILKEAgdkggVGKVITSTYLNFTDPKALDKLLTFkNIELKLFitk- 102  Photobacterium...
YP_001489127  11 TNFFNNITELLdnCESFYFNVAFINFSGIQLLLDSFKKLeekniKGKILTSTYLNFTQIKALEKIKKFkNIELKIYdcev 90   Arcobacter but...
ZP_06621405   15 INVLDDLLKSLdrCSGFYFTVAFMTYGGIQLLLQKFKELeergvEGKILTSTYQNFSEPKAIEKLQEFqNIEVRLFdkq- 93   Turicibacter s...
YP_001621073  17 SSFYHYLKDALkrCQSFSFSVAFISDSGLQLIIDDLIDAgkrgvKGKLITTNYEFGTTPRALEMIGDQnYIEAKLYdalt 96   Acholeplasma l...
Feature 1              # #               # #          #                         
NP_373013    116 ---aGFHAKGYIFEHkdysSMVIGSSNLTsnALKVNYEHNVLLSTmkNGDLVDSVKNEFELLW 175  Staphylococcus aureus subsp. au...
ZP_04776340   94 -nkhGFHTKGYLFRYgdswKVLVGSSNLTsaALTINKEWNTFIEG--DRILTDNILDEFNSLW 153  Gemella haemolysans ATCC 10379
ZP_02865887  121 -sekGFHTKAYIFENednfKIIIGSSNITqrALKSNVEWNVMIISkkDTDFVKEVLEEYEGIW 182  Clostridium perfringens C str. ...
ACV22179     120 ---gSFHAKGYLFKHgelkKLIVGSSNLTdtALTSNQEWNLSVTSaeNGKLAKDYQLEFNRLW 179  Slackia heliotrinireducens DSM ...
ADH98263      93 -kevGFHTKVYIFEYddydKVIIGSSNLTqsALKSNIEWNVEIISkqDGAFIENVRREFDRLW 154  Bacillus selenitireducens MLS10
ACZ25233     103 gsghGFHTKGYIFRKdesyQIIVGSSNLTinALKKNREWNTRSEAhcSDTYAREITEEFDLYW 165  Veillonella parvula DSM 2008
ZP_01220543  103 -pnlGFHPKGYIFEYasetKVIVGSSNITqsALKSNVEWNVATTAtaEDPFVTTVMNEFNSIW 164  Photobacterium profundum 3TCK
YP_001489127  91 -sniGFHSKSYIFEFkddyKILIGSSNITasAFKSNIEWNVKTITkkDDIFLKDVLNEFGTLW 152  Arcobacter butzleri RM4018
ZP_06621405   94 -ldgGLHAKGYLFIQgevvEVYIGSSNLTtsALKDNIEWNVKLTKsiQEPFVKEVLKDYEQLW 155  Turicibacter sp. PC909
YP_001621073  97 -sirKFHTKAYIFDMgnhfEIVVGSSNMTqyALKNNHEWNLKYVAknDDKTKENIIDNFDELF 158  Acholeplasma laidlawii PG-8A

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