Conserved Protein Domain Family
PLDc_N_DEXD_a

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cd09179: PLDc_N_DEXD_a 
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain
N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Statistics
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PSSM-Id: 197276
Aligned: 57 rows
Threshold Bit Score: 174.731
Created: 28-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
EFF15574      10 TEYRSLLTDIsGEFLIPALREAVQYDRAVGFFSSTilsnTSYGIEGLVKNggKIRLVASPYLtddDIAAIKAGYKqrddv 89   Ruminococcus a...
YP_477947      8 RRFSSRQQRLsHVFLKDRLAKARTYKRIAGYFRSSi--fELVTEEITHIE--QVQIVCNSDLdpwDIAIGKASRQarema 83   Synechococcus ...
NP_863922      5 YRFSSRRERLdHAFLAKRLQSAKSYKRIAGYFRSSi--fELVGEQISSIP--KVQIICNSELdaaDVVISKHVRDtalke 80   Rhodopirellula...
YP_002017229   5 RRFSSLRERLdHVFLAEKLHNARSYKRIAGYFRSSi--fELVGEEIEHIP--DVRIICNSELdpnDIMVSKAAREaalke 80   Pelodictyon ph...
YP_567153     19 QRFSSRLGRLsHVYLKDQLRGASEYRRIAGYFRSSi--fDLVNEEIEGIG--KVRIVCNSDLdpeDINAAKQARTqllke 94   Rhodopseudomon...
YP_002124433  21 FEYTTDGQNLpIEFYLDVIPLSKSIHLKLGYFSSKalrlLSCALAQFIYRggTLNIVSNHFVygeDRALFSEDSLlseel 100  Alteromonas ma...
YP_002863057   3 SRYSSRREKLdKSFLNDKLSGAKAYDRIAGYFSSSi--lELASEDIENMEg-IVRVVCNSDLnkeDVMTATLAKNamrke 79   Clostridium bo...
YP_002785249   4 RRFSARLGRIdEDFLIPRLTGASTYDRLCGYFTSSv--lHLLQEPFSTVG--HIRMVCNSDLnpsDVAVAKIAEEqqrrr 79   Deinococcus de...
YP_002523563   3 LRYSSRRAPL-RAFLTEALDGALAYDRIAGFFSSSilevAGEPLERMAPGa-RVRVVANSALqplDVATARAAKAamyae 80   Thermomicrobiu...
CAJ75167       3 NRFSSRINNMgEGFFKNALQGAVSYDRIAGYFSSSi--iEIAGEYIEQMQg-KVRIVCNSQLqadDVKYIKDQPQamkle 79   Candidatus Kue...
Feature 1                                                          # #                # #        
EFF15574      90 iksvlh-kemkepenefeQERLNLLANLIKDGFLDIKIAfcdndsqvGMYHEKLGLITDscGNTIAFSGSMNETntaiNV 168  Ruminococcus a...
YP_477947     84 lkekwneekgelitsllqRPRYRQLYEILKSGKVEVRVVsaa---daPFLHGKAGVIEArdGTKSAFIGSLNETrqgwQE 160  Synechococcus ...
NP_863922     81 rwnea----pseveallhRDRYRQLHSLLTSGQVEIRVVpk----hhVFIHGKAGVIEAgdGSKTCFLGSINETksafAH 152  Rhodopirellula...
YP_002017229  81 rwnqm----pvetealmhREQYKKLYELLLSGRVHIKVVpk----ntVFVHGKAGLITLanGQRTCFLGSVNDSraafSK 152  Pelodictyon ph...
YP_567153     95 kwnev----ddavesffrRPRYQRLFDILTKGNVEIRVVsra---daPFVHGKAGVIYRpdGTSSAFMGSLNETregwSA 167  Rhodopseudomon...
YP_002124433 101 dlknlv--hiksalttseEHFFNCLKYLRKQGRLRIVPVmlk---paRMTHFKQGVFTDhfDNEIFMDGSCNFTanglLE 175  Alteromonas ma...
YP_002863057  80 wcef-----kpeeiqftpSKRLEKLYNLLKDEKLQVRVLpne---yfGLIHGKAGVITLkdGSKTSFMGSVNETfsawKL 151  Clostridium bo...
YP_002785249  80 whaskp-elqllhappeiRERLRLLHAALLSGQIEIRVLpde---afGFMHGKAGVVTN--GTKTAFMGSVNDTasawSR 153  Deinococcus de...
YP_002523563  81 wcrs-----lpeylpprlKERLRRLYTFLASGQLQVRVLpdt---yfGLIHGKAGVITRadGSRIAFLGSVNESqeawEV 152  Thermomicrobiu...
CAJ75167      80 wceg-----kpeeefsriSDRLKRLYQYLKTGKLDVRVLpnd---vfGLIHGKAGVITKtdGRRVAFLGSMNETysgwSQ 151  Candidatus Kue...
Feature 1          #                              
EFF15574     169 NYEAIDVFRSWtnefenerVNKKRNAFTAIWND 201  Ruminococcus albus 8
YP_477947    161 HYEIVWEDQSPe------gVAWVEAEFQYLWER 187  Synechococcus sp. JA-2-3B'a(2-13)
NP_863922    153 NYEILWEDRSAe------gVAWVEEEFDALWSD 179  Rhodopirellula baltica SH 1
YP_002017229 153 NHEILWEDQSAe------gCDWVEQEFDALWKL 179  Pelodictyon phaeoclathratiforme BU-1
YP_567153    168 NYEFVWEDTSAd------gVAWVEDEFEYLWER 194  Rhodopseudomonas palustris BisB5
YP_002124433 176 NAETLSVFRLWastfeqskGQGKKSEIEAILNK 208  Alteromonas macleodii 'Deep ecotype'
YP_002863057 152 NYELLWEDDSEd------tIEWVQEEFDALWNS 178  Clostridium botulinum Ba4 str. 657
YP_002785249 154 NYELLWEDASPe------gVAWVQAEFDALWNH 180  Deinococcus deserti VCD115
YP_002523563 153 NYELLWADDSEa------gVSWTIEEFEALWHH 179  Thermomicrobium roseum DSM 5159
CAJ75167     152 NYELAWVDDDEs------aINWVQQEFNALWEH 178  Candidatus Kuenenia stuttgartiensis

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