Conserved Protein Domain Family
PLDc_N_Snf2_like

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cd09178: PLDc_N_Snf2_like 
N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family
N-terminal putative catalytic domain of uncharacterized archaeal and prokaryotic HKD family nucleases fused to putative helicases from the Snf2-like family, which belong to the DNA/RNA helicase superfamily II (SF2). Although Snf2-like family enzymes do not possess helicase activity, they contain a helicase-like region, where seven helicase-related sequence motifs are found, similar to those in DEAD/DEAH box helicases, which represent the biggest family within the SF2 superfamily. In addition to the helicase-like region, members of this family also contain an N-terminal putative catalytic domain with one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily.
Statistics
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PSSM-Id: 197275
Aligned: 54 rows
Threshold Bit Score: 116.882
Created: 28-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic siteputative
Feature 1:putative active site [active site]
Evidence:
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                               
ABQ89875              4 IFDNIE-----KHLLSALTDAMKl---------------sERADFCVGYFNLRGWKQLSPLVDRWaggeghCCRLLVGMQ 63   Roseifl...
NP_111201             4 IIDNSK-----QNLAGVLRREMSh---------------vEELAIASAYFNLEGYRNIQEGLKNK------PLKLLLGRE 57   Thermop...
YP_876439             9 IIDNVD-----THMDYMLNAYIPe---------------vSKIDISTGYFNVEGYAQIRKTLEPYiks-ghPLRLLLGTD 67   Cenarch...
tigr:AAur_pTC10285    7 FATNAApsepeTTVADKVNELFRllrqn--------kvtaPPIAIATAYINPAGFALLADELEAAp-----RVRLLLGAE 73   Arthrob...
ZP_06897578          25 FITNQDg----NTLLAALKAAIPdaptraapaaadaspalTEISIATAFMSPAGFGAIAERLEQAg-----RVRLLIGAE 95   Roseomo...
YP_002019670         10 IRDNHSh----GTVGDFLKKNITd---------------aSSLSIVSAYFTIYAFHHLKDELTSIe-----NLRFLFGEP 65   Pelodic...
YP_001741015          9 IRDNHQr----GTVGNFISEHLSe---------------gCSLSFVSAFFTIYAYNQLKNKLDNIq-----DLRFLFGEP 64   Candida...
ZP_01630033          13 IRDNRNr----GTVGDFLKDKIEl---------------gSQLSIVSAYFTIYAFEALKQELCSId-----SLNFLFGEP 68   Nodular...
YP_001173673         12 IRDNHSr----GKVSDFLAEKMTt---------------gSQLSVVSAYFTIYAYDALSKQLDQId-----HLNFLFGEP 67   Pseudom...
ZP_02929613          12 LRDNRPt---rGTVGDFLKQKIQp---------------dSILSFVSAYFTVHAYQALAEQLENAd-----SLRFLFGEP 68   Verruco...
Feature 1                                                                                               
ABQ89875             64 qmpqdqlkqalrfgrdghdidqatatvlk----rklaqefrdqlivgvptnedeaglqrlasQIVAKKVVVKLFLr-HPL 138  Roseifl...
NP_111201            58 psesikfeeeaiknlesydedfyseq----------kdvfasevlnneddvsyfsalhnaveFFKRPEVEIRRVKg-RFF 126  Thermop...
YP_876439            68 alrpgqrsfetykkkltnngkldddas---------ndvsmsadldgkldvtkmdnvaslmnLVRNNNVEVRMGDg-RFN 137  Cenarch...
tigr:AAur_pTC10285   74 peedsvraitagdadqdarrdaaiaahqaw---leaerdtmgfarvptseakrmvewlqcvdPDGAARVEVRRYTg-GFL 149  Arthrob...
ZP_06897578          96 pepealrlarghlrkpgdppqaaferrevaeglklleaglraerdrqpfsaearrhlrrmaaMLRAGTLETRRYEr-AFL 174  Roseomo...
YP_002019670         66 tflksldpnkvntrdfkiedd---------------------qlviptesrltqknvarecaEWLSRKAEIRSMVkpNFL 124  Pelodic...
YP_001741015         65 rfisqidpktdkkqfqiedd----------------------kliiplqnrltqsriafdcaNWIKEKCEIKSMVkpNFL 122  Candida...
ZP_01630033          69 rfiqsigtntdrksfkied------------------------tgiqlssrlrqsklarecqEWIQKKVNIRSIKesNLL 124  Nodular...
YP_001173673         68 rfiasldpdktdkkafkied-----------------------eglelanrlqqkeiarrcaAWLRDKVDIRSVRqaNLL 124  Pseudom...
ZP_02929613          69 tfvsgidkggkqaanfklte-----------------------ngltiaktlvqgaaaracaAWIDRMVQIRSIRqsNFL 125  Verruco...
Feature 1               # #                    # #               #                          
ABQ89875            139 HAKLYLLFrrdp--lnpKIGYLGSSNLTLAGL-----AGQGELNIDVLDhd-acDKLARWFEDRWNDR 198  Roseiflexus sp. RS-1
NP_111201           127 HGKAYMGArtsfsnmvsGFAIVGSSNFTGGGL-----SGNRELNMLTTDre-gvTELIKWFLELWKED 188  Thermoplasma volcan...
YP_876439           138 HSKCYIVStd-----kgGAAFVGSSNLTYGGL-----HKNMELNAGLYGkn-gvESTEKWFEKAWDGS 194  Cenarchaeum symbios...
tigr:AAur_pTC10285  150 HGKTYLVEdg-----aaQAAIAGSSNMTYAGL-----AHNAELNLGTGGgtssaSKVREWFEHFWDLS 207  Arthrobacter auresc...
ZP_06897578         175 HAKATLLDgp------dPGLIAGSSNLTRAGL-----TTNLELNLGRWDpa-lfSQAKAWFDALWDEG 230  Roseomonas cervical...
YP_002019670        125 HGKMYHILqpn----gvEKAIAGSSNFTVNGLgl-ggNRNIELNMIIDSdr-drTELKEWFDNLWNDQ 186  Pelodictyon phaeocl...
YP_001741015        123 HGKMYHIKsan----gnEKAILGSSNFTVNGLgf-gnSPNIELNIEVDSdr-drADLLNWFNELWNDD 184  Candidatus Cloacamo...
ZP_01630033         125 HGKMYHIDnn-----gvKTAILGSSNFTLKGLglakvNSNIELNLIVDSer-drQDLKFWFEELWNNH 186  Nodularia spumigena...
YP_001173673        125 HGKLYHIDdg-----rrEHALLGSSNFTRRGLgl-sdTPNIELNLIVDGdr-drADLKQWFDEIWSDE 185  Pseudomonas stutzer...
ZP_02929613         126 HGKAYHIQng-----naSSAILGSSNFTVPGLgl-gpNSNIELNLIVDSdp-drRDLKAWFDEVWTDE 186  Verrucomicrobium sp...

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