Conserved Protein Domain Family
PLDc_CLS_unchar2_2

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cd09163: PLDc_CLS_unchar2_2 
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197260
Aligned: 33 rows
Threshold Bit Score: 259.409
Created: 24-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_884499    339 VASGPDSALGSTHKMLLGALAvAQRHVRIQSPYFLPDQTLIGALgtAARRGIRVDIVIPGSNNLRLVnYAMSAQLDQVIR 418 Bordetella para...
ZP_02927245  310 VPDGPDEDLELMPKAIFAAISeARHSVRIMTPYFLPPPTLIWALnlAALRGVDVKVLTPRRNNIPFVrWAARTLYPEMLE 389 Verrucomicrobiu...
BAG14179     307 IPDGPDNKSGTIERIAHGAINvAAEKILIVTPYFLPENNILAALemATMRGVDVDIIIPDKSDYSFMdWAVEPNFMRLVK 386 uncultured Term...
ABV27322     301 IEAGPDETLDRLRWVFLGALNvARQTVRIWTPYFVPDQSLLAALstAALRGVEVDILTPVENNHPLVqWAGRAHYWQVLE 380 Candidatus Chlo...
YP_960650    301 IEAGPDEALDRLRWTFMGALSaAKHSVRIWTPYFVPDQPMIAALstAALRGVRIDVLTPANGDHPPVqWAARAHYWQVLE 380 Marinobacter aq...
YP_003527409 297 IEDGPDEGLDRLAMTLMGVVGgARRRIRIMTPYFLPHRELIGALqgAAVRGVMVEVLLPQRSNLRYVdWATRHSLWELLQ 376 Nitrosococcus h...
ZP_06690173  301 IEAGPDEALDRMRWTFMGALSaAKHSVRIWTPYFVPDQPMIAALstAALRGVRIDVLTPANGDHPTVqWAARAHYWQVLE 380 Achromobacter p...
YP_615442    292 IESGPDETLDRMRWIFIGAINaAQKKISIRTPYFLPDQPTIAALgaAALRGVRVEIVVPRNSDHLFVqWASKAHYWQIIE 371 Sphingopyxis al...
YP_001875233 310 IPDGPESEEEKIMTVCLAGLNyANKKINIITPYFLPTEIILKAIemAAMRGVEVNIILPRSSNHKIIeWGGEANYARLLK 389 Elusimicrobium ...
YP_001875736 311 ISDGPDQSYSKIETLVTAMLGqAKHKIDIITPYFLPNETVLTAIeiASMKNVEVNVIIPKKTDIPGMdYAMSANYERLLS 390 Elusimicrobium ...
Feature 1                     # #            # #          #                                      
NP_884499    419 TGCRVWRSAGAFDHSKLLTVDDAWSYVGSSNMDPRSLRLNFELDTEIYDreLAGWIGQRIdaqirharqetlqalnaqpF 498 Bordetella para...
ZP_02927245  390 KGVKIYEADGHFDHSKFMTVDGLWSLVGSTNWDPRSLRLNFEFNLACFDdlLAQELDREFekkvrngtleslaalrsatL 469 Verrucomicrobiu...
BAG14179     387 SGVKIYRTPPPLDHSKIFVVDSEWVFIGSANWDVRSFKLNFESNIEIFSknLAKELIAIAelkkrkakfttvheckalpL 466 uncultured Term...
ABV27322     381 HGARIWERPGPFDHSKLMVVDGRWVCIGSANWDARSLRLNFEFNLEVYDtaLAQQLEALFqearqeaalvtadqlrarpL 460 Candidatus Chlo...
YP_960650    381 HGVRIFERPGPFDHSKLMVVDGAWCCLGSANWDARSLRLNFEFNVEVYDteLSTRLSSLFdaardasgeisakalralpL 460 Marinobacter aq...
YP_003527409 377 WGVRVGLKPPPFAHSKIFMVDDDYVLAGSANLDPRSLRLNFEVGVELFDatLAATVSDYLdkawkdaqilrledldqrsI 456 Nitrosococcus h...
ZP_06690173  381 HGVRIFERPGPFDHSKLMLVDGAWCCLGSANWDARSLRLNFEFNVEVYDtaLSTRLSSLFdaardasgeisakalrarpL 460 Achromobacter p...
YP_615442    372 HGVCIYERPGPFDHGKLMIIDDAWVCVGSANWDARSLRLNFEFNLEIYDrrLALELGDDFarirsaskkvrptdlsdmpY 451 Sphingopyxis al...
YP_001875233 390 HNVNIYLTGAPFDHSKAMTVDGVWSFIGSSNWDERSFKLNFEANMEVVCykLAKQIDDYLkdrinnaekikftdydkmpL 469 Elusimicrobium ...
YP_001875736 391 RNVNIYLNPMPFDHSKACVIDGAWTLIGSANWDERSFKLNFESCVECVSkdIAAEVEKYInskkriskkqmfktyakmsL 470 Elusimicrobium ...
Feature 1                        
NP_884499    499 IKRLRNKVIWLATPYL 514 Bordetella parapertussis 12822
ZP_02927245  470 AERLRDGFARLFMPFL 485 Verrucomicrobium spinosum DSM 4136
BAG14179     467 LKRIRNNMYRLLTPYG 482 uncultured Termite group 1 bacterium phylotype Rs-D17
ABV27322     461 PIRLRDGAARLFSPML 476 Candidatus Chloracidobacterium thermophilum
YP_960650    461 AIRLRNGVARLFTPIL 476 Marinobacter aquaeolei VT8
YP_003527409 457 PVRLRDGFFWLFSAYL 472 Nitrosococcus halophilus Nc4
ZP_06690173  461 AIRLRDGVARLFTPIL 476 Achromobacter piechaudii ATCC 43553
YP_615442    452 FVKLRNGFARLFSPIL 467 Sphingopyxis alaskensis RB2256
YP_001875233 470 LRKLRNNACRLATPYF 485 Elusimicrobium minutum Pei191
YP_001875736 471 HKRIRNNIFRLLTPYY 486 Elusimicrobium minutum Pei191

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