Conserved Protein Domain Family
PLDc_CLS_unchar1_2

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cd09162: PLDc_CLS_unchar1_2 
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197259
Aligned: 15 rows
Threshold Bit Score: 250.256
Created: 24-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_002943659 288 LPSGPDQTEDTAHALLIDACFrAEHRVLAVTPYFVPGDGLRDALrLAARRGVQVTIAMPARSNHRLADFVRARAMRDLAR 367 Variovorax para...
YP_001819747 307 VASGPDVPGDPLYEGILAMIQdAKRSLWIVTPYFLPDEVLLRSLmVKAHAGCAVNLILPARSNHPVTDFARRHYVRELQR 386 Opitutus terrae...
NP_866917    290 MPIGPDGPEEILEDFWNYAINrAEERVWICTPYFVPTAQSMRCLeSACRRGIDVRILVPDDSDLAPVDYARIDYMDDLQY 369 Rhodopirellula ...
ZP_05101691  283 VPSGPDITEDPLHDGLLRALHmANTRIWISTPYFVPTEPLANALrIAALRGVDIRIMVPQKSFQHTADFARGAYLRDAEA 362 Roseobacter sp....
YP_393669    270 VPSGPDTQRDVFYEMLLSNIYeAKKSISIITPYFIPNSSLMEALiIAKHKGVDIALITPKEANHTIINLARGSYIRELEE 349 Sulfurimonas de...
YP_943785    292 VPSGPDIKGDALFEALISAIHsAKERIWIVTPYFLPDETLMHALkIAKHNGVDIKLITPKQSDHLVADLGRSSYMRELQE 371 Psychromonas in...
YP_003548846 309 MASGPDVSNDPLWEQILRIIQeFRQSFTIITPYFIPDEVLFRSMiVKAHTGRQIRLVLPLKSNQRLVDIARYHFLRQLNE 388 Coraliomargarit...
ZP_05059973  288 MASGPDTPGDPFYEKVLASIQeAEKAITIVTPYFIPDEVLLRSLtVKARTGKRVTLIVPKRSNHRITDLARKHFLRELNE 367 Verrucomicrobia...
YP_002989635 291 VPSGPDVPRDPVHDALLTAAFtAEKRLWIVTPYYVPDEALAQALrLAALRGVDLRVVVPAKSNHKLADLARGTHLRDLEE 370 Desulfovibrio s...
YP_002363440 287 AASGPDVPGDPVYAAIVSAAFsARWRLWIVTPYFIPPDGLAGALaLAAHRGVDVRIYVPDPSNHFIADLARGQPLRDAAA 366 Methylocella si...
Feature 1                     # #            # #          #                                      
YP_002943659 368 AGVSFRMLp-FMAHAKAVVVDdELAMCGSINLDLRSLLLNHEAAVVFYGPrEIDWLAEWIdtiasage---pyrarrpgL 443 Variovorax para...
YP_001819747 387 AGGRIWLFqpGMLHSKAMIVDdRVALFGSANFDMRSLFVNFEIGVFVHSSaDVLAIKGWAsslvsqskphrpdkrrkrtF 466 Opitutus terrae...
NP_866917    370 LGAKLYRYqdSMVHAKLGIVDdFTAVVGSANFDVRSFFLNYELSVVIHDQpTIQKFSDWYesllpnce----lglpehtA 445 Rhodopirellula ...
ZP_05101691  363 AGAVIHYYtpAMMHAKAMVID-DAAAMGTANFDVRSMLLNFETMLFLYDAgSVAALSEWFiegfaqch----tntphprL 437 Roseobacter sp....
YP_393669    350 NGIKIYLHvgAMLHAKAIIFDnKCVVLGSANFDNRSLFLNYEVATFVYNDkAIKEIHSWSkklmkest----igasdvsT 425 Sulfurimonas de...
YP_943785    372 EGINLVLYngKMLHAKAILFDqDAVMIGSVNIDNRSLLLNYEVVSFAYSKaIISEIEKWMqgfitnad----tqmkeasR 447 Psychromonas in...
YP_003548846 389 AGVEILFYkpRMIHAKLILADnKVALTGSANMDMRSLFVNFEIGQLHYSPrDLDKLQTWAediykdcis-ydeaiaqgiM 467 Coraliomargarit...
ZP_05059973  368 AGAHILTYerEMMHGKAMLIDdSMAMTGSANMDLRSLFVNYEVAAFFYTPsDIKEVENWIqdvisrcsrlteeelaprrH 447 Verrucomicrobia...
YP_002989635 371 CGGRVVKYp-HMVHAKVIVVDdRLAVVGSANMDMRSLFLNYEIVMFTYSEaDVKPVSDWVqglidvst----egtvpvgM 445 Desulfovibrio s...
YP_002363440 367 AGVSVIRFvgGMVHAKILVVDdGLAMVGSVNIDPRSLFLNFEANAVVYGRaEVLAVATWIemlgdetr----kgvapvsA 442 Methylocella si...
Feature 1                        
YP_002943659 444 VRDVAEGLLLTVAFQL 459 Variovorax paradoxus S110
YP_001819747 467 VGNVLEDLSRLLAPLL 482 Opitutus terrae PB90-1
NP_866917    446 WRSTLGLCARLFASEL 461 Rhodopirellula baltica SH 1
ZP_05101691  438 PRKLAEAIFRIGAPVL 453 Roseobacter sp. GAI101
YP_393669    426 LRRIFENFMRIFAPQL 441 Sulfurimonas denitrificans DSM 1251
YP_943785    448 LRCIAENFMRILAPQL 463 Psychromonas ingrahamii 37
YP_003548846 468 PNRSIENVVHLVTPLL 483 Coraliomargarita akajimensis DSM 45221
ZP_05059973  448 LKGLAEDLSRLIGPLL 463 Verrucomicrobiae bacterium DG1235
YP_002989635 446 VRDTIEGAARLVAPLL 461 Desulfovibrio salexigens DSM 2638
YP_002363440 443 FRDAIEGFARTLDPLL 458 Methylocella silvestris BL2

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