Conserved Protein Domain Family
PLDc_PaCLS_like_2

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cd09161: PLDc_PaCLS_like_2 
Putative catalytic domain, repeat 2, of Pseudomonas aeruginosa cardiolipin synthase and similar proteins
Putative catalytic domain, repeat 2, of Pseudomonas aeruginosa cardiolipin (CL) synthase (PaCLS) and similar proteins. Although PaCLS and similar proteins have not been functionally characterized, members in this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, PaCLS and other members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197258
Aligned: 14 rows
Threshold Bit Score: 293.041
Created: 24-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S/T-x-N in this subfamily, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q9HTH0       315 VASGPADAQeTCSLFFVEMInaAHERVWITSPYFVPDEAVMAALRLAVLRGVDVRLLIPSRPDHRTVYAASSLYALEAIR 394 Pseudomonas aer...
AAV95444     296 VATGPGDRTeSGAMMFFAAItaAERRCWIASPYFVPDLDILAALKHAALRGVDVRLLVPDEADHTIPWLAAFAYFDEVRE 375 Ruegeria pomero...
ZP_02927699  325 LPSGPADEFeTCTLFFLRAIqaAQKRVWIASPYFVPDEQFTSALQIAALRGVDVQILVPQHADSQLVHLSSFTYLPALEK 404 Verrucomicrobiu...
NP_488263    305 FPTGPADKLkACKLFFVSAInqAQTRLWIATPYFVPDDSTLTALKLAALRGVDVRIILPNRPDHLLVYLCSFSYYTEMKA 384 Nostoc sp. PCC ...
ZP_05082641  301 MPTGPADIQeDCAITFVESIarAKDRLWIVSPYFVPGIEVLTALYAAALRGVDVRILLPEKADHWLVWLASYAHADNLAS 380 Pseudovibrio sp...
YP_957793    303 LPTGPADTWeTCTLFFLNCInnARTRIWIASPYFVPDFQIMNALQLAALRGVDVRILIPEKTDSPLVRLAAYSYLVQASQ 382 Marinobacter aq...
ZP_05093113  304 FPSDPASEYeEAGLMFHQTIvaAQRRIWIASPYFVPDRGIVAALQLAALRGVDVRVMIPDEPDGPVVAMANWSFTNELIA 383 marine gamma pr...
YP_002514575 315 LPSGPADRFeTASLMMQQAIhaAHHRIWIASPYFVPDEGVIGMLKLAALSGVDVRILIPERPDNLLTYYAAYAFVGPLLE 394 Thioalkalivibri...
ZP_06370506  296 LPTGPADDIeSCDLFFLQAItaARHRLWIVSPYFVPDQEITSALQLAALRGVDVRIMLPLHPDHKLVYLASFSYLPDLET 375 Desulfovibrio s...
YP_001878624 309 LPSGPADVIpAWKTALIALAnsATRRLWISTPYFVPDEGVMAALQAAALRNVDVRILRPERADHILVKLSSFTFLRDLDT 388 Akkermansia muc...
Feature 1                     # #            # #          #                                      
Q9HTH0       395 AGVKVFRYqPGFLHQKVVLVDrDTAAVGSANLDNRSFRLNFEVMVVTVDegFAGEVEAMLEADFaesleftpedrrsvrR 474 Pseudomonas aer...
AAV95444     376 AGVRVMRYtDGFLHQKVFVVDdTIAAVGTTNLDNRSFRLNFEAMALFFDatVAGQVTAMLEHDFasstelt-rslaaqpV 454 Ruegeria pomero...
ZP_02927699  405 AGVKVWRYtGGFLHEKAILVD-DYCGVGTANFDNRSFRLNFEITVLFAEegVVQQAEQMFQKDFarsvpahaadfterpW 483 Verrucomicrobiu...
NP_488263    385 TNIKLYRYkHGFMHQKVILIDkEMAGVGTVNLDNRSFFLNFEVMGFVANsqFVKSVEEMLQADLkaalavdfsdyerkyL 464 Nostoc sp. PCC ...
ZP_05082641  381 HGIKVYRYlEGFLHEKVILIDnELAGIGTVNFDNRSFNINFEITLWFTGqnMIKKTEEMLQQDFkgarqtdrlelnnrrY 460 Pseudovibrio sp...
YP_957793    383 AGIGIYRYqPGFMHQKVVLVDsRYAAIGTANLDNRSMRLNFEITAVNTSptFIQQVETMLEEDLgasrpmtendyrqrsI 462 Marinobacter aq...
ZP_05093113  384 CGVKVYRYqGGFMHQKVLLMDdQLAGVGTANFDNRSFRLNFEITLLVHDlfFARKVESMLERDFdrsrlvvkeeiankpA 463 marine gamma pr...
YP_002514575 395 AGVRIYRYqDGFLHGKAFVVDeVGGAVGTVNLDNRSFRLNFEVTALVMDpdFARELEAMFETDYarsremrlaelhqlpL 474 Thioalkalivibri...
ZP_06370506  376 LGVKFYRYvNGFLHQKVILVDdVMASVGTANCDNRSFRLNFEITMAVADpeFIRQVEAMLLADFaccqpvsaddyedrtF 455 Desulfovibrio s...
YP_001878624 389 YGIQLWAYqKGFLHQKVVLMDdDIATVGTANLDNRSLALNFEITAVIHSpsACAEVKAMLEQDFssskresladynnksL 468 Akkermansia muc...
Feature 1                        
Q9HTH0       475 LQQLGMRVARLVSPIL 490 Pseudomonas aeruginosa
AAV95444     455 FIRYGAPLARLFAPIL 470 Ruegeria pomeroyi DSS-3
ZP_02927699  484 WFRLAARTSWLMAPVQ 499 Verrucomicrobium spinosum DSM 4136
NP_488263    465 WFKLAVRISSLLKPLL 480 Nostoc sp. PCC 7120
ZP_05082641  461 AFRVLAQAARLFSPIL 476 Pseudovibrio sp. JE062
YP_957793    463 LFRLGCRAVRLLAPLL 478 Marinobacter aquaeolei VT8
ZP_05093113  464 WFTLGMAVARLFSPVL 479 marine gamma proteobacterium HTCC2148
YP_002514575 475 WHRIAARAAYLFAPVL 490 Thioalkalivibrio sp. HL-EbGR7
ZP_06370506  456 VFKTAVMLSRLLSPIL 471 Desulfovibrio sp. FW1012B
YP_001878624 469 GFKMLCNLARLTAPVQ 484 Akkermansia muciniphila ATCC BAA-835

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