Conserved Protein Domain Family
PLDc_CLS_unchar2_1

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cd09157: PLDc_CLS_unchar2_1 
Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin synthase
Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197254
Aligned: 32 rows
Threshold Bit Score: 216.663
Created: 24-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
ADC71046     117 TDGDQAYAAMLAAIDCASHSITLATYIFDyDVVGQRFVRHLKAARdRGVEVRVLIDGIGARYsr-rNTLRFLKRv-GIPA 194 Thioalkalivibri...
BAG14179     125 QNGIEAYPEMIKTIQTAKKEILISSYIFDcDSETDKFLEAFKTAIkNGATVKVLIDGIGTLKlfhrSIEKKLALikGLEY 204 uncultured Term...
YP_002480932 121 HNGDEAYPAMLKAIREAKEQVFLCTYIFNaGKTATDFGNAMAEAAeRGVDVRLLVDGIGMLYsw-rKPWKKLAEr-GVNV 198 Desulfovibrio d...
YP_003159446 123 CNGDEAYPVMLRAMEDARHSIYLTTYILDtDNLGLKFIDALARAVhRGVDVRVLIDGVGEKYsw-pRASRVLTKk-GVPN 200 Desulfomicrobiu...
ZP_01312794  121 YNGEQAYPVMLKSIRAAERSIDLSSYIFDtQFCGREFVQALIERAeAGVAVRVLVDGLGECYsw-pRVHTLFDKt-PVQV 198 Desulfuromonas ...
YP_001340203 143 VNGDNAYPAMIKSIQAAKHHIVLSSYIFDyDSLGRQFVNALAQAQqRGVVVHVLLDGIGVGYsw-rKSDRALKRr-GVRT 220 Marinomonas sp....
YP_594968    128 YNGEEVYPKMLEAISKATHRVYLSTFIFGnDFVGTLFIKTINEAAiRGCEVKILLDGIGSFFpi-kSWREKLHP--AIKL 204 Lawsonia intrac...
ZP_01128596  115 HNGESAYPAMLDAIEHAQRTVFLSTYIFEsNRTGRKFADTLARAVaRGVDVRVLLDGAGEWYsl-pRIRSILHRc-GVRV 192 Nitrococcus mob...
YP_001875736 130 INGEQAYPVMIDLIKNAKKEVLLESYIFDyDSLFEQFFAAFKQASaNGAKIKVLIDAIGVGTar-yKMQKRLREikNLET 208 Elusimicrobium ...
YP_001875233 129 INGDQAYPEMAGAISKAKKDVLLSSYIFDyDNAGKIFVDAIKKACsNGAKIYILIDAVGNSKyn-sKLGRIFKKlkNVNF 207 Elusimicrobium ...
Feature 1                            # #            # #                     #                    
ADC71046     195 AAFMPVHHlprtLAAFNLRNHRKMLLVDgEHGFTGGMNIRRGHSasn-----pgPHPIQDLHFEVRGPIClQLQRVFAED 269 Thioalkalivibri...
BAG14179     205 SIFLPPYIpv-tIPFVNLRNHRKIMVIDgETAFFGGMNLSKKNVlid-----dhKNGILDITFKIKGHVInQMSYVFEDD 278 uncultured Term...
YP_002480932 199 AMFLPPRLfp-pNFSINLRNHRKMLVCD-NTAFTGGMNISDDNIsa------gkTKYVQDVHFHCQGPIVnQLRRAFLLN 270 Desulfovibrio d...
YP_003159446 201 ALFIPPRLfp-pDLHFNLRNHRKVLVVDgSLGFTGGMNISQKHLlha-----kpPWPVTDMHFIVHGPVAnLLQDTFVDD 274 Desulfomicrobiu...
ZP_01312794  199 VRFLPLSLfr-rGMHLNLRNHRKLLIVDgRVGFAGGMNISQRHLvqkkrhdvrpRERVVDIHFKVEGPVVrQMLEVFQED 277 Desulfuromonas ...
YP_001340203 221 AQFLPAISft-sIRFINLRNHRKILCVDgEEAYIGGMNISKSNLvg------saKHPIDDVHFKVTGPVIdQISQVFIED 293 Marinomonas sp....
YP_594968    205 AYFLSPSLlp-pKLSINLRNHRKILVCDsNIAFTGGMNISQHHLvtl-----kkSNRVQDIHFYCAGPIAkQLEIAFLLD 278 Lawsonia intrac...
ZP_01128596  193 AVFLPPRLlp-pRLLLNLRNHRKILAVDgDTAFIGGMNIGDRHLihr----ydgRRGITDMHFRIEGPVArQIESVFLSD 267 Nitrococcus mob...
YP_001875736 209 GIFLPPKFiv-sLPFVNLRNHRKMLIADgKTAVFGGMNITKNSLvkt----apsKNAVQDITFKIEGGVIkQLSALFEAD 283 Elusimicrobium ...
YP_001875233 208 VKFLPPNIpi-sLPFINLRTHRKILIVDgNTAFFGGMNIRGKCMlkd-----npKNPTRDITFKVSGPVIdQIREIFVED 281 Elusimicrobium ...
Feature 1           
ADC71046     270 WQF 272 Thioalkalivibrio sp. K90mix
BAG14179     279 WEF 281 uncultured Termite group 1 bacterium phylotype Rs-D17
YP_002480932 271 WGF 273 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
YP_003159446 275 WFF 277 Desulfomicrobium baculatum DSM 4028
ZP_01312794  278 WQF 280 Desulfuromonas acetoxidans DSM 684
YP_001340203 294 WFF 296 Marinomonas sp. MWYL1
YP_594968    279 WSF 281 Lawsonia intracellularis PHE/MN1-00
ZP_01128596  268 WLF 270 Nitrococcus mobilis Nb-231
YP_001875736 284 WHF 286 Elusimicrobium minutum Pei191
YP_001875233 282 WYF 284 Elusimicrobium minutum Pei191

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