Conserved Protein Domain Family
PLDc_CLS_unchar1_1

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cd09156: PLDc_CLS_unchar1_1 
Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin synthase
Putative catalytic domain, repeat 1, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197253
Aligned: 15 rows
Threshold Bit Score: 230.609
Created: 24-Jun-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
NP_866917    108 HRTTDVLDAYLELIDEAKEVLYVMTFIMDeRKSTQRIVERLCARAReGVQVRLLCDGFGSFlm---sDEQLEQIREAGGR 184 Rhodopirellula ...
ABB41530     112 QSAVETYQQFMQTLEKAQSQICLETYSFElDKTGQEILDVLIRKAKaGVEVRLLMDAVGSFsiy-rnQGQLARLTEAGGK 190 Thiomicrospira ...
YP_393669     91 TESTEAYRVLLECIKEAKSSIYISTYIFEyDATTKEIMKALISRAKdGVEIKVLADSLGSIfly-itQYRLKELRDAGVR 169 Sulfurimonas de...
ZP_04989771  124 TDGVKSFQAFIQAIESAQQNIYIQTYVFKnDTTSKLVINALEKKAAeGVEIKMMIDSLGSFyvyrhnRKIFKKLRDLGAK 203 Francisella tul...
YP_983689    116 QDGREALDALRSVIQGAGSTLDVCTFLLGrDTLGREVIDLLVRQSRaGVTVRLLIDGIGVYlg---gRPDLKPLSAAGVR 192 Polaromonas nap...
YP_002989635 110 PTGIDIYNELVKLIENAEHQILITTFILSrDEVGKDIVERLARKAEsGVTVRLLLDDIGSMft---sRRFLKKLIDNGGK 186 Desulfovibrio s...
YP_003548846 127 PDGVSGFERFCQEIREAKHSIHIATYILGdDATGRSIVDLLVQRAEeGVTVRLLLDSLGSWnc---tRRARHRLRKAGGQ 203 Coraliomargarit...
ZP_05059973  106 PKGTDAYDVLIDSIQSAKTSIDITTFILShDAVGRRVIKELSKKAKeGVEVRLLLDAIGSWgk---kTLYMLDLEKAGGR 182 Verrucomicrobia...
YP_002943659 107 ADGDAAREALWQVIDGARERIDVCTFIIGdDALGHAVIERLALRAReGIKVRVLLDGFGALtl---pRRHMRLLRAAGGE 183 Variovorax para...
ZP_05101691  105 KTPQAAFEAVMDTIDSAQHSIDSLFYILTdDDTGRRFVDALTAKAKsGVKVRLLIDRLGTLrg---pHKALNALRAAGAE 181 Roseobacter sp....
Feature 1                            # #            # #                    #                     
NP_866917    185 AMRFKPMSqlsrlAYLNFRNHRKLAVADgRRAILGGANLVEEELdi----nEDDESWVDMSILIEGPAAaqLQAVFCSDW 260 Rhodopirellula ...
ABB41530     191 YSFFQPLFknvfnSQLNLRNHRKIYLIDdHTLFTGGMNLSNNYFgsq-enePKEGYWIDLLFKIEGPLTehYQKIFNEDW 269 Thiomicrospira ...
YP_393669    170 FEFFMPIFkmplrNYINLRNHRKIYLFDsKIALNSGGNLSDNYLga----eYSKERWRDLLFLVEGESVkeYFELFASDW 245 Sulfurimonas de...
ZP_04989771  204 VVFFMPVIsnplrNYINYRNHRKIYIFDnHTVFSGGMNIGDEYMsp----iEHQGMWDDLLFKIQGESLiyFLKVFCSDW 279 Francisella tul...
YP_983689    193 VALFVSPFrsplpGRTNLRNHRKMVIADgQRMWSGGRNLAAEYFvgdlactPQKMPWIDLSFDLQGDLArqAQQRFDLDW 272 Polaromonas nap...
YP_002989635 187 VAYFMPLFrapfhGNSNLRNHRKIAIADqKIVLAGGTNIANEYIgp----ePCEERWTDLSFVLQGPAVrhYIEVFQSDW 262 Desulfovibrio s...
YP_003548846 204 VAMFIPVLpfkssVSTNLRNHRKIAVFDnCRAITGGQNLDNRFMgp----sPDDSRFTDFSVVTHGPAVahLHRIFISDW 279 Coraliomargarit...
ZP_05059973  183 IERFMPVFpisfpGATNLRNHRKIAIFDkSSAIVGGRNIGREYMgp----tPSKGRWTDFGVYFSGPAVtaLNTIFEEDW 258 Verrucomicrobia...
YP_002943659 184 IAVFRPFFslrriGPRNLRNHRKFTIADdGWLWSGGRNLASEYFag---ndAQPDAWRDLSFDLRGSVAaaAARQFDHDW 260 Variovorax para...
ZP_05101691  182 VFFFAPILqppgsGHLSLRNHRKMIIADhSTVFSGGMNIGANYMtd----aPNDKTWVDLAFTLEGLAVqgFCDVFRSDW 257 Roseobacter sp....
Feature 1         
NP_866917    261 N 261 Rhodopirellula baltica SH 1
ABB41530     270 H 270 Thiomicrospira crunogena XCL-2
YP_393669    246 F 246 Sulfurimonas denitrificans DSM 1251
ZP_04989771  280 H 280 Francisella tularensis subsp. novicida GA99-3548
YP_983689    273 A 273 Polaromonas naphthalenivorans CJ2
YP_002989635 263 L 263 Desulfovibrio salexigens DSM 2638
YP_003548846 280 A 280 Coraliomargarita akajimensis DSM 45221
ZP_05059973  259 A 259 Verrucomicrobiae bacterium DG1235
YP_002943659 261 S 261 Variovorax paradoxus S110
ZP_05101691  258 E 258 Roseobacter sp. GAI101

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